| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3800 |
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| Symbol | |
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| ID | 7388251 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 3160578 |
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| End bp | 3161279 |
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| Gene Length | 702 bp |
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| Protein Length | 233 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643652567 |
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| Product | outer membrane protein |
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| Protein accession | YP_002550748 |
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| Protein GI | 222149791 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3047] Outer membrane protein W |
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| TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.550263 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAACGA ACCGCACCCT TGGCTTGATA GCGCTTGCGC CCCTTGCTTT CGCATCGCTG
TCTTTGGCGA CGCCTCTGGC CTCTGCGGCG GATCTGACAC CGGCGGCAAG CGCTCCGCAA
GCCGAATCGC TGCTGACGCC CTACAGCCCC TGGCAGGTCC GCGCCCGTGC GCTGGCCGTG
GTACCCAATG ATGGCGGCTC GGTGGATGGC ATTGGCGGCT CCGATCTGTC CTACAGCAAC
AGCGTCACGC CGGAAGTCGA TTTCAGCTAT TTCTTCAATC GCAACATCGC TGCCGAACTC
ATTCTCGGCA CGACGTCAGC GAACGTCAAT GCCGGGGGCT CAATCGGTAG CCTGGGCAAG
CTCGGCAAGG TCTGGATCCT GCCGCCAACG GTAACGCTGC AATATCACTT CACCGATTTC
GGCAAGTTCC AGCCCTATGT TGGCGCGGGC GTCAACTATA CGATGTTCTA CAATCAGTCG
GCGACCGGTT CCGCCACCAA GCTCGATGTC AAGAATACCT TCGGTGCCGC CGTGCAGGTC
GGTTTCGACT ACATGATCAA CGACAAGTGG GGCGTCAACT TCGACGTCAA GAAATATTAC
CTGCGCCCGG ATTTCGAAGC GACCGTTGGT GGCTCCAAGG TCAAGGGCAC TGCCAAGCTC
GATCCATGGC TGATCGGCGC CGGTGTCACC TACCGCTTCT AA
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| Protein sequence | MSTNRTLGLI ALAPLAFASL SLATPLASAA DLTPAASAPQ AESLLTPYSP WQVRARALAV
VPNDGGSVDG IGGSDLSYSN SVTPEVDFSY FFNRNIAAEL ILGTTSANVN AGGSIGSLGK
LGKVWILPPT VTLQYHFTDF GKFQPYVGAG VNYTMFYNQS ATGSATKLDV KNTFGAAVQV
GFDYMINDKW GVNFDVKKYY LRPDFEATVG GSKVKGTAKL DPWLIGAGVT YRF
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