| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3792 |
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| Symbol | pckR |
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| ID | 7388245 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 3153623 |
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| End bp | 3154648 |
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| Gene Length | 1026 bp |
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| Protein Length | 341 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643652561 |
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| Product | transcriptional regulator LacI family |
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| Protein accession | YP_002550742 |
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| Protein GI | 222149785 |
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| COG category | [K] Transcription |
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| COG ID | [COG1609] Transcriptional regulators |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.190437 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCGCAAA AGATCAAGTT ATCGACCATT GCCGAAAGTC TCGGCCTGTC TACCGCCACG
GTATCGCTGG CCTTGCGAGA CAGTCCGCTG GTGGCGGCAG ATACGCGCGA AAAGATCAAG
GACCAAGCCC GGCTGCTTGG CTATATCTAT AACCGTCGCG CCGCCAGCCT GCGCACCTCG
CGTTCCGGCA TTATCGGTGT TGTCGTTCAT GACATCATGA ACCCGTTTTA CGGCGAAATT
CTGAAAGCCA TTGAAAGCGA GCTGGACCGC AGCCGCCAGA CGTTCATTCT GTCCAACCAC
TACGATTCGG TGGAAAAGCA GCGGACCTTC ATCGAGACGC TGCTGCAACT GGGCGGTGAC
GGGGTGATCA TGTCGCCTGC CATCGGCTCA CCGCCGGAGG ATGTGATGCT GGCCGAAGAC
AATGGCATGC CCGCCATCCT GATTGCCCGG TCCATGGACG GGCTGGCCCT TCCGACCTAT
CGCGGCGATG ACAGCTACGG CATTTCGCTG GCCACCAACC ACCTGATCGG CCTTGGCCAC
CGCGTCATCG CCATGGTTGG CGGCACCGAT CAAACCTCGA CGGGGCGCGA CCGCTATCAG
GGCTATGTCA ACGCCTTGCG CAAGGCGGGC ATTGCCGTCG ATCCCAATCT GCGCCTTCCC
GGACCGCGCA CCAAACAGGG TGGTTTCGAG GCGGCGGTGA ATTTTCTGTC GCTGCCACAA
AAGCCGACGG CGGCGGTGTG CTGGAACGAT CTGGTCGCGA TTGGGTTGAT GAATGGCATA
TCGCGTGCCG GGCTGGTGCC GGGCCGCGAT ATATCCGTCA CCGGCTACGA CGATCTGGAG
GAAGCCTCTA TTGCCACGCC GGCACTGACC ACTGTGTCAA ACGGACAGGC GGAAGTGGGC
AGGCTTGCGG CGCGCGCGCT TCTGGATAAG CTGGCGGGCA GTCATGAGCC TGATGGTATT
CACCTTATCA AGCCTGAAAT GCGTATCCGC CAATCGACTG GCCCCGTTAA ACATCGAGAC
GAATAG
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| Protein sequence | MAQKIKLSTI AESLGLSTAT VSLALRDSPL VAADTREKIK DQARLLGYIY NRRAASLRTS
RSGIIGVVVH DIMNPFYGEI LKAIESELDR SRQTFILSNH YDSVEKQRTF IETLLQLGGD
GVIMSPAIGS PPEDVMLAED NGMPAILIAR SMDGLALPTY RGDDSYGISL ATNHLIGLGH
RVIAMVGGTD QTSTGRDRYQ GYVNALRKAG IAVDPNLRLP GPRTKQGGFE AAVNFLSLPQ
KPTAAVCWND LVAIGLMNGI SRAGLVPGRD ISVTGYDDLE EASIATPALT TVSNGQAEVG
RLAARALLDK LAGSHEPDGI HLIKPEMRIR QSTGPVKHRD E
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