| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3789 |
|---|
| Symbol | |
|---|
| ID | 7388242 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 3150428 |
|---|
| End bp | 3151534 |
|---|
| Gene Length | 1107 bp |
|---|
| Protein Length | 368 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 643652558 |
|---|
| Product | periplasmic mannitol-binding protein |
|---|
| Protein accession | YP_002550739 |
|---|
| Protein GI | 222149782 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG4663] TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATCGTC GTGGATTTTT GAAGAAGGCC GGTGTCGCAG GCGTCGGTTC GCTTGGAGCG
GTTGGGCTGG CCGCACCCGC CATTGCCCAG CAGGCACCGA AAATCAGTTG GCGACTGACC
TCGTCCTTCC CGAAATCGCT GGACACGATT TATGGTGGTG CTGAGGATAT TGCGGCCCGC
GTGGCGGCGG CAACCGATGG CAATTTCACC ATCCAGGTGT TTGCGGCAGG TGAAGTGGTG
CCGGGCTTGC AGGCCGCCGA TGCGGTTGGC GCTGGCACGG TGGAAATGTG CCATACCTGC
TCCTATTACT ATGTCGGCAA GGACCCGACC TTTGCGATTG GCACCGCCAT TCCCTTCGGG
CTGAATGCGC GCCTCACCAA TGCCTGGTTC TATCAGGGCA ATGGCAATAC GCTGCTCAAC
GAATTCTACG CCAAGCACAA TCTCTATGGC ATGGTGGCTG GCAATACCGG CGCGCAGATG
GGCGGCTGGT TCCGCCGCGA AATCAACACC GTCGATGACC TCAAGGGCGT GAAAATGCGC
ATTGCCGGCT TGGCTGGCAA GGTCATTGAA AAGCTGGGCG GCGTGCCGCA GCAGATTGCT
GGCGGCGATA TCTATCCGGC GCTGGAAAAA GGCACCATCG ACGCCGCCGA ATGGATCGGC
CCCTATGACG ACCACAAGCT CGGCTTCTAC AAGGTCGCCA AATATTACTA CTACCCCGCC
TTCTGGGAGG GTGGCCCGGC CATCCACGCC TTCGTTAATC TCGCCAAATG GAACGAACTG
CCGAAATCCT ACCAGACCGT GTTGCAGGAC GCCTGCGCCT TCGCCAATAC CAATATGATG
GCGAAATACG ACCTGAAAAA CCCTGTTGCG ATCAAGCAGA TCGTCTCGGA AGGCACCACG
CTGAAACCCT TCAGCCAGGA CATTCTCGAC GCCTGCTTCA AAGCGTCCAT GGAAGTCTAC
GCCGAAATCT CCGCCAAGAA CCCGGATTTC AAGAAAGTCT ACGACGACCA GGTCGCCTTC
AAGAAGGAAG CCTATCTGTG GATGCAGCTG GCAGAATACA CCTATGATAC GTTCATGATG
ATTCAGCAGC GCGGGGGTAA GCTATAA
|
|---|
| Protein sequence | MDRRGFLKKA GVAGVGSLGA VGLAAPAIAQ QAPKISWRLT SSFPKSLDTI YGGAEDIAAR
VAAATDGNFT IQVFAAGEVV PGLQAADAVG AGTVEMCHTC SYYYVGKDPT FAIGTAIPFG
LNARLTNAWF YQGNGNTLLN EFYAKHNLYG MVAGNTGAQM GGWFRREINT VDDLKGVKMR
IAGLAGKVIE KLGGVPQQIA GGDIYPALEK GTIDAAEWIG PYDDHKLGFY KVAKYYYYPA
FWEGGPAIHA FVNLAKWNEL PKSYQTVLQD ACAFANTNMM AKYDLKNPVA IKQIVSEGTT
LKPFSQDILD ACFKASMEVY AEISAKNPDF KKVYDDQVAF KKEAYLWMQL AEYTYDTFMM
IQQRGGKL
|
|---|
| |