| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3780 |
|---|
| Symbol | |
|---|
| ID | 7388234 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 3147268 |
|---|
| End bp | 3147660 |
|---|
| Gene Length | 393 bp |
|---|
| Protein Length | 130 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 643652550 |
|---|
| Product | transcriptional regulator protein |
|---|
| Protein accession | YP_002550731 |
|---|
| Protein GI | 222149774 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1733] Predicted transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.616266 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCACCCAG GAACGCCCGA AACCGAATGG CGCGAAGATT GCGCGCCGCG CCGCGTGCTC
GAACTGTTTT CCACCAAATG GACCAGCATG GTGCTGCACA CCCTGCATGC CCGCCATGGG
GGGACAGCGC GCACCGGCGT GCTGCTGCGC AGCCTGCCCG GTATTTCCAA GAAAATGCTG
ACTCAGACAC TACGCGACAT GGAAGCCAGC GGCCTGATTT CCCGCCACGT CCAGGCCACC
ATTCCACCCG CCGTCGAATA CCGGCTGACC CCGCTCGGCA GCCGGTTTAT CGAGCCGGTC
GAAATGCTCT ACGCCTGGGG GAGAGACAAT GCCGACGCGC TGGATGCACT GCGGCCAAGG
CCGGGGTCAC GGCGGGAGGG TTTGGAGGGG TAA
|
|---|
| Protein sequence | MHPGTPETEW REDCAPRRVL ELFSTKWTSM VLHTLHARHG GTARTGVLLR SLPGISKKML
TQTLRDMEAS GLISRHVQAT IPPAVEYRLT PLGSRFIEPV EMLYAWGRDN ADALDALRPR
PGSRREGLEG
|
|---|
| |