| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3774 |
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| Symbol | soxB |
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| ID | 7388230 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 3140646 |
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| End bp | 3141899 |
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| Gene Length | 1254 bp |
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| Protein Length | 417 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643652545 |
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| Product | sarcosine oxidase beta subunit |
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| Protein accession | YP_002550726 |
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| Protein GI | 222149769 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
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| TIGRFAM ID | [TIGR01373] sarcosine oxidase, beta subunit family, heterotetrameric form |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCAAAT ATTCGGTTTT TGCCGTAGCC CGCGAAGCGC TTCGCGCCCA TACCGGCTGG
AGTGCGCAAT GGACATCGCC AGAGCCACGC AAATCCTATG ATGTCATTAT TATTGGCGGT
GGCGGCCATG GTCTGGGGGC TGCTTATTAT CTGGCCAAGG AACATGGCAT CACCAATATT
GCCGTGATTG AAAAAAGCTG GATTGGCGGC GGCAACACCG GGCGCAACAC CACCATTATT
CGCTCCAACT ATCTCTATGA AGAGAGCATG GACATTTACG AGCACTCCCT GAAACTCTGG
GAGGGCTTGA GCCAGGAGCT TAATTACAAT GTGATGTATT CGGCCCGTGG CGTGATGATG
CTGTCGCACA ATGTGCATGA CAAGCAGAGT TTTAAGCGCC ATGTTCATGC CAACACGCTC
TATGGCATTG ATAATGAGTG GCTGACGCCG GAACAGGCTA AGGCCTTCTG TCCGCCGCTG
GATATTGCCA AAACCGCCCG CTACCCCATC AATGGAGCCG CCCTGCAACG GCGCGGCGGC
ACGGCCCGCC ATGATGCCGT GGCTTGGGGC TATGCCCGCG CAGCCTCTGA TCGCGGTGTG
CATATCATTC AAAATTGCGA AGTGACGGGT ATTCGCCGGG GAGCAAGTGG TGAAGTCACG
GGTGTTGATA CCTCCAAGGG CTTTATAGGT GCCAAGAAAA TCGGTGTTTC TGCCTCCGGC
CATAATTCCA TGGTGATGGG CATGGCAGAT GTGCGCCTGC CGATTCATTC CACGCCGTTG
CAGGCGCTGG TGTCGGAGCC GCTGAAGCCG ATTTTCCCCT GCGTGGTGAT GTCCAACACC
GTGCATGCCT ATATCTCGCA ATCCGATAAG GGCGAGTTGG TGATTGGGGC TGGCACCGAC
CAGTATAATT CCTATTCCCA GACAGGCGGC CTGCAAATCA TCACCCACAC GCTGGATGCG
ATTTGCGAGC TGTTCCCCAT CTTCCGCCGC GTCAAGATGA TGCGCCAGTG GGGCGGGATT
ACTGATAACA CCGCCGACCG CTCGCCCATC CAGAGCGTAA CCCCCGTGCC AAACCTGTTT
GTCAATTGCG GCTGGGGTAC GGGCGGCTTC AAGGCCACAC CGGGCTCTGC CAATCTGTTT
GCCCATCTGA TTGCCAAGGG CGAACCGCAT GCGCTGGCCA AGGGCCTGAC GCTGGATCGG
TTCCGCACCG GGCGATTGAT TGATGAGGCG GCAGCCGCCG CCGTGGCACA CTAG
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| Protein sequence | MRKYSVFAVA REALRAHTGW SAQWTSPEPR KSYDVIIIGG GGHGLGAAYY LAKEHGITNI
AVIEKSWIGG GNTGRNTTII RSNYLYEESM DIYEHSLKLW EGLSQELNYN VMYSARGVMM
LSHNVHDKQS FKRHVHANTL YGIDNEWLTP EQAKAFCPPL DIAKTARYPI NGAALQRRGG
TARHDAVAWG YARAASDRGV HIIQNCEVTG IRRGASGEVT GVDTSKGFIG AKKIGVSASG
HNSMVMGMAD VRLPIHSTPL QALVSEPLKP IFPCVVMSNT VHAYISQSDK GELVIGAGTD
QYNSYSQTGG LQIITHTLDA ICELFPIFRR VKMMRQWGGI TDNTADRSPI QSVTPVPNLF
VNCGWGTGGF KATPGSANLF AHLIAKGEPH ALAKGLTLDR FRTGRLIDEA AAAAVAH
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