| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3760 |
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| Symbol | glgB |
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| ID | 7388217 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 3124904 |
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| End bp | 3127153 |
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| Gene Length | 2250 bp |
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| Protein Length | 749 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643652533 |
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| Product | glycogen branching enzyme |
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| Protein accession | YP_002550714 |
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| Protein GI | 222149757 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
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| TIGRFAM ID | [TIGR01515] alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGAAAA CAACCAGGCA GACGCAGGTA TCAGCCGAGA GCGGCCATCC GCCCTCCGCT
GACCACCTGT CTTCTGCCGA GATCGAAGCC ATCGTCGCCG GCCTGCACAC CGATCCGTTT
TCGGTGCTCG GCGTTCATGC CGGAGCGAAT GGGTTCATTG CCCGCTGTTT TGTGCCGGGC
GCCGAAAGCA TTACCGCGCT CACGCTCGAC GGCAGCCTTG CCGGAGAGCT GGCCTGTCTT
GACCCAGCTG GCTTTTTCGC CGGTCCGGTG GCGATCAAGA CCCAGCAGCC AGTGCGCTAC
CGCGCCTGCC GGGGCGATGT GGAATGGTCG CTGACCGATC CCTATAGTTT CGGCCCGGTT
CTCGGACCCA TGGACGATTA CTTCCTGCGC GAAGGGTCGC ATCTGCGGCT GTTCGACAAG
ATGGGCGCCC ATCCGATCAA GCATCAGGGC GTTGATGGCT TTCATTTCGC CGTCTGGGCG
CCAAATGCAA GACGGGTCTC GGTGGTCGGC GATTTCAATG AATGGGATGG CCGCCGCCAT
GTGATGCGGC TGCGCCGCGA TACCGGCATC TGGGAGATTT TCGCTCCTGA TGTTCGTCCG
GGTTCGGCCT ATAAATACGA GATCATCGGC GTCAATGGCG AGCTTTTGCC GCTGAAGGCC
GATCCTTTCG CCCGCCGCAG CGAGTTTCGC CCGCAGACCG CTTCTGTCAC CGCCGCCGAG
CTTTCCCAGG ACTGGGAAGA TGCGGCACAT CTGGCCCATT GGGGCAGCAT CGACAAGCGC
CGCCAGCCGA TCTCGGTCTA TGAGGTCCAT GCCGGTTCCT GGCAGAAGCG TGCGGACGGC
ACCTTCCTTA GCTGGGACGA GCTGGCGGAA CGGCTGATCC CCTATTGCAC CGAGATGGGC
TTTACCCATA TCGAATTTCT ACCCATCACC GAACATCCCT ACGATCCGTC CTGGGGCTAT
CAGACAACAG GTCTTTATGC GCCGAGTGCG CGGTTCGGCG AGCCGGAAGG CTTTGCCCGT
TTCGTCAACG GCTGTCACAA GGTTGGCCTC AGCGTCATTC TCGACTGGGT TCCGGCCCAT
TTCCCGACCG ATGCCCATGG GCTGCGCTTT TTCGACGGCA CCGCTCTTTA CGAGCATGAG
GATCCGCGCA AGGGCTTCCA CCCCGACTGG AACACCGCCA TCTACAATTA CGGGCGGATC
GAGGTTCTCT CCTATCTGGT CAACAATGCG CTGTACTGGG CGGAAAAATT CCACCTGGAC
GGCGTGCGGG TCGATGCGGT CGCCTCAATG CTCTATCTCG ACTATTCCCG CAAGGAAGGC
GAGTGGATCC CCAATGAATA TGGCGGGCGG GAAAACCTGG AGGCGGTGCG CTTCCTGCAA
AAGATGAACG AGCATCTCTA TGGCGCCCAT CCGCAGGTGA TGACCATTGC GGAGGAAAGC
ACCTCCTGGC CGAAAGTGTC CCAGCCGGTC CACGAGGGCG GGCTTGGATT CGGCTTCAAG
TGGAACATGG GCTTCATGCA CGACACTTTG AGCTATTTTG CCCGCGATCC CGTGCATCGC
AAGCATCACC ATCATGAAAT CACCTTCGGG CTGATCTATG CCTATAGCGA AAATTTCATG
CTGCCGATTT CCCACGATGA AGTGGTGCAT GGCAAAGGTT CGATGATTGC CAAGATGCCT
GGAGACGATT GGCAAAAATT TGCCAATCTT CGCGCCTATT ACGGCTTCAT GTGGGGTTAT
CCCGGTAAAA AACTGCTGTT CATGGGGCAG GAATTTGCCC AATGGAGCGA ATGGAGCGAG
GAGCGGTCGC TGGACTGGAA CCTGCTGCAA TATCCGCTGC ATGAGGGCAT GCGCCGTCTG
GTGCGTGATC TGAACTTTAC CTATCGCAAC AAGCCGGCGC TGCATGCCCG CGATTGCGAG
GGCGAAGGCT TCGAATGGCT GATCAGCGAG GATGCCGATC AATCGGTCTT TGCCTGGCTG
CGCAAGACGC CCGGTGAACG GCCGGTGGCT GTGATCGCCA ACCTGACGCC GGTCTATTAC
CAGCGTTACG ACGTGCCGCT GCCGGTGGCA GGCCGGTGGC GGGAAATCCT CAATACCGAT
GCCGAGATCT ATGGCGGTAG CGGCAAGGGC AATGGCGGCC GGGTGGAGGC CGTACTCGAT
GCGGCAACCG CCTCTGACAA GGCGCCATGG GCGCACGCGA CGCTATCACT GCCGCCGCTG
GCAGTGATCA TGCTGGAGTT GGAACAGTAG
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| Protein sequence | MKKTTRQTQV SAESGHPPSA DHLSSAEIEA IVAGLHTDPF SVLGVHAGAN GFIARCFVPG
AESITALTLD GSLAGELACL DPAGFFAGPV AIKTQQPVRY RACRGDVEWS LTDPYSFGPV
LGPMDDYFLR EGSHLRLFDK MGAHPIKHQG VDGFHFAVWA PNARRVSVVG DFNEWDGRRH
VMRLRRDTGI WEIFAPDVRP GSAYKYEIIG VNGELLPLKA DPFARRSEFR PQTASVTAAE
LSQDWEDAAH LAHWGSIDKR RQPISVYEVH AGSWQKRADG TFLSWDELAE RLIPYCTEMG
FTHIEFLPIT EHPYDPSWGY QTTGLYAPSA RFGEPEGFAR FVNGCHKVGL SVILDWVPAH
FPTDAHGLRF FDGTALYEHE DPRKGFHPDW NTAIYNYGRI EVLSYLVNNA LYWAEKFHLD
GVRVDAVASM LYLDYSRKEG EWIPNEYGGR ENLEAVRFLQ KMNEHLYGAH PQVMTIAEES
TSWPKVSQPV HEGGLGFGFK WNMGFMHDTL SYFARDPVHR KHHHHEITFG LIYAYSENFM
LPISHDEVVH GKGSMIAKMP GDDWQKFANL RAYYGFMWGY PGKKLLFMGQ EFAQWSEWSE
ERSLDWNLLQ YPLHEGMRRL VRDLNFTYRN KPALHARDCE GEGFEWLISE DADQSVFAWL
RKTPGERPVA VIANLTPVYY QRYDVPLPVA GRWREILNTD AEIYGGSGKG NGGRVEAVLD
AATASDKAPW AHATLSLPPL AVIMLELEQ
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