| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3755 |
|---|
| Symbol | |
|---|
| ID | 7388213 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 3119444 |
|---|
| End bp | 3120322 |
|---|
| Gene Length | 879 bp |
|---|
| Protein Length | 292 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 643652529 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002550710 |
|---|
| Protein GI | 222149753 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1305] Transglutaminase-like enzymes, putative cysteine proteases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGTACG ATCTGACACT GCATATGGGC TATGATTACG ATGTGGCCGC CGCTGGTGGA
CGCCATATCC TGCGCATCAT GCCGATCTCG CTGCCGGAGC GGCAAAGGCT GATTGCCGGT
TCGATTTCCA TCGAGCCGCA GCCGGATGAA CGGACCGGTT TTGCCGATTT TTTCACGCAT
CCCGCCACGA CTTTCGCCTA TCGCTCTTCC CATGACACAC TGGATATCCG CCTTCAGGCT
CGTATCCAGG TGGATAGCCA ACCGTTCACT GCGGATTTTT CGCCACTGCT CGAACGGCTA
GCCGTCGAGC TTTTCGAATA TTGGTCGCTG GAGCCAGCCT CCCCGCATCA TTTCACCGGA
TCGAGCCCAC GGCTGCCTGA AAACCCCGAT ATTGCCGCCT ATGCCCGCTC CATCGTGAAG
CCCGGCATGA CCGTGCGCCA GATTGCCGAA CAACTTTGCG CCCGCATCCA CAAGGATTTC
AAATACGACC CCAAGGCCAC CACTGTCGAT ACCACCCCGA AACAGGCCTT TGCGCTGAAA
AAGGGCGTCT GCCAGGATTT TTCCCATATC ATGATCGTGG CGCTGCGCAG CCTCGGCATT
CCCGCGGGCT ATGTCAGCGG ATTCCTGCGC ACCATTCCGC CGCCGGGCAA GGAACGGCTG
GCAGGCGCCG ACGCCATGCA TGCCTGGGTC AGGGTATGGT GCGGCAAAAC CGTCGGCTGG
GTCGAGCTGG ACCCGACCAA TGATATTGCC GCCGGCACCG ACCACGTCGT CGTCGCCTAT
GGCCGTGACT ATTCCGATGT CGCACCCGTC ATCGGCGTGC TGAAAGGCTA TGGCAATCAC
ACGACCGTCC AGGCGGTGGA CCTGATTCCG ATTGGCTGA
|
|---|
| Protein sequence | MLYDLTLHMG YDYDVAAAGG RHILRIMPIS LPERQRLIAG SISIEPQPDE RTGFADFFTH
PATTFAYRSS HDTLDIRLQA RIQVDSQPFT ADFSPLLERL AVELFEYWSL EPASPHHFTG
SSPRLPENPD IAAYARSIVK PGMTVRQIAE QLCARIHKDF KYDPKATTVD TTPKQAFALK
KGVCQDFSHI MIVALRSLGI PAGYVSGFLR TIPPPGKERL AGADAMHAWV RVWCGKTVGW
VELDPTNDIA AGTDHVVVAY GRDYSDVAPV IGVLKGYGNH TTVQAVDLIP IG
|
|---|
| |