Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_3749 |
Symbol | |
ID | 7387164 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 3110309 |
End bp | 3111451 |
Gene Length | 1143 bp |
Protein Length | 380 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 643652525 |
Product | Small-conductance mechanosensitive ion channel |
Protein accession | YP_002550706 |
Protein GI | 222149749 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0668] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.175296 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAGACTA TTTTTGAAAC ATTGCAACAT GCCGTCGCAT GGATGCCGGA TTGGGCTGTT TCCCTTTGCG TCCTGCTTCT TGCTTTTCTG GTGGGCATGT TAATTCAGCA CTTCGGCTTC CGCATGCTGA CGCGGCTGAC GGAAAATCGC GATCTTTTCT GGCGCTCACT GGTGCAGCGC ACCCGACGAC CCTTGCGGCT TGCCATCCTG ACCTGGACGC TCTCCATCGG CGTGACTGTC GCACCTCTAA GTGATGTGGC AGCCAATATC GTGCGCCATG CTTTGCTGCT GTGCTTCGTC ATCGTTGTCG GATGGATGAC CCGCACCGCC CTGCATATCT GGGTCACCGT CTATCTTCGC CGCTTCAAGC TTGATGCCGA AGACAATCTA CTAGCCCGCA AGCATGTCAC CCAATCCCGC ATCATGGAAA GGGTGGCCGC TACCGGCATC GTCGCCCTCA CCGCGGCAGC CGTTCTGATG TCTTTTCCGG CGGTGCGCCA ATATGGGGTC AGCCTGCTGG CTTCGGCGGG TGTCGCGGGT ATCGTTCTCG GTCTCGCCTT ACAGCCGATG CTGAAAAATC TGTTTGCCGG GCTGCAATTG GCCATCACTC AGCCGATCCG CATCGATGAC GCGCTGATTG TTGAAGGTGA GTTCGGTCAT GTCGAGGAAA TAACCGCCAC CTATGTGGTG GTGAAGCTCT GGGATTGGCG AAGACTGGTC CTGCCGCTCA ATTATTTCAT CGAAAAACCT TTCCAGAACT GGACCCGCGA AGGGGCGGCG CTGATCGGCA CGGTCATGCT CTACATGGAC TATTCCGTTC CGGTCTCCAC ACTGCGCCGA AAAACCGAGG ATATCGTCAG GTCAGCGCCG TTGTGGGATG GAAATGTCTT CAACCTCGCC GTCACCGACC TGAAGGATCA GGTGATGGAA ATTCGCATTC TGGTGTCCGC CGCCAGTGCC GGAAAGGCTT TCGACTTGCG CTGCTATGTG CGCGAAAAGC TGATGGACTT CATCCAGAAG GACTATCCCG ATGCCCTGCC ACGCCTGCGC ATTCACCAGG AAAAGCCAGA GGCGTTGAAG GACGGGTCGA TGTCACCGAT CCAAGGCAGA GCGACCGCAC GGTCGGAGAA GATAGACGCC TGA
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Protein sequence | MQTIFETLQH AVAWMPDWAV SLCVLLLAFL VGMLIQHFGF RMLTRLTENR DLFWRSLVQR TRRPLRLAIL TWTLSIGVTV APLSDVAANI VRHALLLCFV IVVGWMTRTA LHIWVTVYLR RFKLDAEDNL LARKHVTQSR IMERVAATGI VALTAAAVLM SFPAVRQYGV SLLASAGVAG IVLGLALQPM LKNLFAGLQL AITQPIRIDD ALIVEGEFGH VEEITATYVV VKLWDWRRLV LPLNYFIEKP FQNWTREGAA LIGTVMLYMD YSVPVSTLRR KTEDIVRSAP LWDGNVFNLA VTDLKDQVME IRILVSAASA GKAFDLRCYV REKLMDFIQK DYPDALPRLR IHQEKPEALK DGSMSPIQGR ATARSEKIDA
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