Gene Avi_3749 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_3749 
Symbol 
ID7387164 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp3110309 
End bp3111451 
Gene Length1143 bp 
Protein Length380 aa 
Translation table11 
GC content57% 
IMG OID643652525 
ProductSmall-conductance mechanosensitive ion channel 
Protein accessionYP_002550706 
Protein GI222149749 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0668] Small-conductance mechanosensitive channel 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.175296 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAGACTA TTTTTGAAAC ATTGCAACAT GCCGTCGCAT GGATGCCGGA TTGGGCTGTT 
TCCCTTTGCG TCCTGCTTCT TGCTTTTCTG GTGGGCATGT TAATTCAGCA CTTCGGCTTC
CGCATGCTGA CGCGGCTGAC GGAAAATCGC GATCTTTTCT GGCGCTCACT GGTGCAGCGC
ACCCGACGAC CCTTGCGGCT TGCCATCCTG ACCTGGACGC TCTCCATCGG CGTGACTGTC
GCACCTCTAA GTGATGTGGC AGCCAATATC GTGCGCCATG CTTTGCTGCT GTGCTTCGTC
ATCGTTGTCG GATGGATGAC CCGCACCGCC CTGCATATCT GGGTCACCGT CTATCTTCGC
CGCTTCAAGC TTGATGCCGA AGACAATCTA CTAGCCCGCA AGCATGTCAC CCAATCCCGC
ATCATGGAAA GGGTGGCCGC TACCGGCATC GTCGCCCTCA CCGCGGCAGC CGTTCTGATG
TCTTTTCCGG CGGTGCGCCA ATATGGGGTC AGCCTGCTGG CTTCGGCGGG TGTCGCGGGT
ATCGTTCTCG GTCTCGCCTT ACAGCCGATG CTGAAAAATC TGTTTGCCGG GCTGCAATTG
GCCATCACTC AGCCGATCCG CATCGATGAC GCGCTGATTG TTGAAGGTGA GTTCGGTCAT
GTCGAGGAAA TAACCGCCAC CTATGTGGTG GTGAAGCTCT GGGATTGGCG AAGACTGGTC
CTGCCGCTCA ATTATTTCAT CGAAAAACCT TTCCAGAACT GGACCCGCGA AGGGGCGGCG
CTGATCGGCA CGGTCATGCT CTACATGGAC TATTCCGTTC CGGTCTCCAC ACTGCGCCGA
AAAACCGAGG ATATCGTCAG GTCAGCGCCG TTGTGGGATG GAAATGTCTT CAACCTCGCC
GTCACCGACC TGAAGGATCA GGTGATGGAA ATTCGCATTC TGGTGTCCGC CGCCAGTGCC
GGAAAGGCTT TCGACTTGCG CTGCTATGTG CGCGAAAAGC TGATGGACTT CATCCAGAAG
GACTATCCCG ATGCCCTGCC ACGCCTGCGC ATTCACCAGG AAAAGCCAGA GGCGTTGAAG
GACGGGTCGA TGTCACCGAT CCAAGGCAGA GCGACCGCAC GGTCGGAGAA GATAGACGCC
TGA
 
Protein sequence
MQTIFETLQH AVAWMPDWAV SLCVLLLAFL VGMLIQHFGF RMLTRLTENR DLFWRSLVQR 
TRRPLRLAIL TWTLSIGVTV APLSDVAANI VRHALLLCFV IVVGWMTRTA LHIWVTVYLR
RFKLDAEDNL LARKHVTQSR IMERVAATGI VALTAAAVLM SFPAVRQYGV SLLASAGVAG
IVLGLALQPM LKNLFAGLQL AITQPIRIDD ALIVEGEFGH VEEITATYVV VKLWDWRRLV
LPLNYFIEKP FQNWTREGAA LIGTVMLYMD YSVPVSTLRR KTEDIVRSAP LWDGNVFNLA
VTDLKDQVME IRILVSAASA GKAFDLRCYV REKLMDFIQK DYPDALPRLR IHQEKPEALK
DGSMSPIQGR ATARSEKIDA