| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3716 |
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| Symbol | exsD |
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| ID | 7388187 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 3082077 |
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| End bp | 3082844 |
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| Gene Length | 768 bp |
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| Protein Length | 255 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 643652502 |
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| Product | radical activating protein |
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| Protein accession | YP_002550684 |
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| Protein GI | 222149727 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0602] Organic radical activating enzymes |
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| TIGRFAM ID | [TIGR03365] 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.235387 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | CTGGGCGGAG TATCGTCCTT GACCGCGTCG GAAACCGTGA TCCGGGTCAG CGAAATCTTC
GGGCCGACCA TTCAGGGCGA AGGCGTGCTG ATCGGCCAAC CAACCGTGTT CGTGCGCATG
GGCGGCTGCG ATTATCGCTG TTCCTGGTGC GATAGTCTGC ATGCCGTCGA AAGCCGGTTT
CGGGAAGAAT GGCTGCCGAT GAGCGTCCAG GCCATCTGGG CCGAGGTGGA AAGCCTATCC
GGGGGCGTGC CATTGATGGT GTCGCTATCG GGTGGCAACC CGGCGATCCA GCCGTTGGGC
GCGCTGATTG CCCACGGTCA TGAGCGGGGC TACCGCTTCG CCCTTGAGAC CCAAGGGTCG
ATTGCCCGCG ACTGGTTTGC CGATCTGGAT GTGCTGGTGG TGTCGCCCAA GCCGCCTTCG
AGCGGGATGG AGACGGATTG GGACGCGCTT TCGCTCTGTC TTGAGAAAGC CGCAGCGCGG
GGTGAGCAGC AAAGCCCGCT CACCGTGCTG AAGTTCATCG TCTTCGATGA AGCCGATTAT
GCCTATGCGC GCGATGCCAG CGCCCGGCAT CCGCATCTGC CGGTCTATCT CCAGCCCGGC
AACCATACAC CCCCGCCGCC GGAAGACGAT GACGCGGTCA TCGACATGGA TGGGATCATG
ACCCGGATGC ATTGGCTGGT GGACCGGGTG GTCGAAGACC GCTGGTTTGC CGCCCGTGTG
CTGCCGCAAC TGCATGTGCT GCTCTGGGGC AACAAGCGCG GCGTGTGA
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| Protein sequence | MGGVSSLTAS ETVIRVSEIF GPTIQGEGVL IGQPTVFVRM GGCDYRCSWC DSLHAVESRF
REEWLPMSVQ AIWAEVESLS GGVPLMVSLS GGNPAIQPLG ALIAHGHERG YRFALETQGS
IARDWFADLD VLVVSPKPPS SGMETDWDAL SLCLEKAAAR GEQQSPLTVL KFIVFDEADY
AYARDASARH PHLPVYLQPG NHTPPPPEDD DAVIDMDGIM TRMHWLVDRV VEDRWFAARV
LPQLHVLLWG NKRGV
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