| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3707 |
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| Symbol | |
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| ID | 7388180 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 3071611 |
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| End bp | 3073053 |
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| Gene Length | 1443 bp |
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| Protein Length | 480 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643652495 |
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| Product | homospermidine synthase |
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| Protein accession | YP_002550677 |
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| Protein GI | 222149720 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG5310] Homospermidine synthase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.134775 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCACCC AGACCTATCC GGTTTACGGC GAGATCACCG GTCCGATCGT GATGATCGGC
TTCGGTTCGA TCGGCCGGGG CACCCTGCCG CTGATCGAAC GCCACTTCAA GTTCGACAAG
AGCCGGATGG TGGTCATCGA CCCCCGCAAT GACGAGGCCG AATTGATGGC CAAGCATGGC
ATCAAGCACA TCCAGGCGCA TGTCACCAAG GAGAACTACA AGGACCTGCT GAAGCCGCTG
CTGACAGAAG GCGAAGGCCA GGGCTTCTGC GTCAACCTGT CGGTCGATAC CGGCTCGCTC
GACCTGATGA AGCTGTGCCG CAAGCTGGAC GTGCTCTATA TCGATACGGT GGTTGAGCCT
TGGCTGGGCT TCTATTTCGA CAAGAACATG AAGAACTCAG AGCGCACCAA CTATGCACTG
CGCGAAACCG TTCGCCAGGA AAAGAACAAG AACCCCGGCG GCACCACCGC CGTCTCCACC
TGCGGCGCCA ATCCGGGCAT GGTCTCCTGG TTCGTCAAGC AGGCGCTGGT GAATATAGCC
AATGAAATCG GCCTGAAATT CGAAGAGCCA GCCGTCGGTG ACCGCGAAGG CTGGGCCAAG
CTGATGAAGA AGGTCGGCGT CAAGGGCATT CACATTGCCG AGCGCGACAC GCAGCTGGCC
AAGACACCGA AGCCGCTCAA CGTGTTCTGG AACACCTGGT CGGTCGAAGG CTTTATTTCG
GAAGGCTTGC AGCCAGCCGA ACTCGGCTGG GGCACTCATG AAAACTGGAT GCCGAAAAAC
GCCAAGAAGC ACAAGAAGGG CTGCAAGGCA GCGATCTATC TGGAGCAGCC TGGCGCCAAT
ACCCGCGTGC GCACCTGGTG CCCGACGCCC GGCCCGCAAT ACGGCTTCCT CGTCACCCAC
AACGAATCGA TCTCGATTGC CGATTACTTC ACCGTCGAGA AGGATGGCGA GGTCGCCTAT
CGTCCGACTT GCCATTACGC CTATCATCCG GCCAATGATG CCGTTCTGTC GCTGCATGAA
ATGTTCGGCA ATGGCGGTAC CGCCCAGCCG GTCCTGCATG TTCTCGACGA AAACGAACTG
GTCGATGGCA TCGACGAGTT GGGCGTGCTG CTCTACGGCC ACGAAAAGAA CGCCTACTGG
TATGGTTCGC GCCTGTCGCT GGAAGAAACC CGCCGCATCG CCCCCTACCA GAACGCCACC
GGTCTCCAGG TAACGTCCGC AGTGCTGGCC GGCATGGTCT GGGCCATCGA GAACCCGAAG
GCTGGGATCG TCGAGGCCGA CGAAGTTGAT TACAAGCGCT GCCTGGAAGT GCAGTCGCCC
TATCTCGGCC CGGTCGAAGG CCATTACACC GACTGGACCC CGCTCGACGG TCGCCCCGGC
CTGTTCCCGG AAGACCTCGA CACCAAGGAC GCGTGGCAGT TCAAGAATAT CCTGGTGCGC
TAA
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| Protein sequence | MTTQTYPVYG EITGPIVMIG FGSIGRGTLP LIERHFKFDK SRMVVIDPRN DEAELMAKHG
IKHIQAHVTK ENYKDLLKPL LTEGEGQGFC VNLSVDTGSL DLMKLCRKLD VLYIDTVVEP
WLGFYFDKNM KNSERTNYAL RETVRQEKNK NPGGTTAVST CGANPGMVSW FVKQALVNIA
NEIGLKFEEP AVGDREGWAK LMKKVGVKGI HIAERDTQLA KTPKPLNVFW NTWSVEGFIS
EGLQPAELGW GTHENWMPKN AKKHKKGCKA AIYLEQPGAN TRVRTWCPTP GPQYGFLVTH
NESISIADYF TVEKDGEVAY RPTCHYAYHP ANDAVLSLHE MFGNGGTAQP VLHVLDENEL
VDGIDELGVL LYGHEKNAYW YGSRLSLEET RRIAPYQNAT GLQVTSAVLA GMVWAIENPK
AGIVEADEVD YKRCLEVQSP YLGPVEGHYT DWTPLDGRPG LFPEDLDTKD AWQFKNILVR
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