Gene Avi_3704 details

Gene Information

• Locus tag: Avi_3704
• ID: 7388178
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 3069331
• End bp: 3069975
• Gene Length: 645 bp
• Protein Length: 214 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 643652493
• Product: hypothetical protein
• Protein accession: YP_002550675
• Protein GI: 222149718
• COG category: [E] Amino acid transport and metabolism; [H] Coenzyme transport and metabolism
• COG ID: [COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATTTCA CGCTGATTGA AACGCTCCGC TGGGAGCCAG GCCAGGGCTT CATCAGGCTC 
GACCAGCATT TGCGGCGCCT GTCGCGCTCC GCCGATGCGC TGGGTTTTCG CCAGCCGATC 
AAGCCAGAAG CGGCATTAAA AGAAGTGGTA CATGGCGATA CCCCGCTTCG GGTGCGCCTC 
GCGATGAATT TTCGTGGCAA GCTGGAAGCT GCGGCAGTTC CCTTCGAATC CGTCGGCGAA 
AACACCATCT GGCGTCTTCG CATCGCGCAA AAGACCCGGC TGAATTCAGA GGATACCCTC 
TATCGCCACA AGACGTCGCG GCGCGATCCC TATGACGCCG CCCGCGCCGA ATTTTCCACC 
GAAGAAGCAG ACGAAGTCCT GCTACTGAAC GAGCGTGGTG AAATCTGCGA GGGGACATTC 
ACCAATGTCT TCGTCCAGGG ACTGGATGGC ATGCTGATCA CCCCGCCGCT GACCAGCGGT 
CTCATTCCTG GCATCCTGCG CGCCGAGCTG ATCCGGGACC GCAAGGCTCG CGCCGATCTG 
CTGAAACCGG AAAGTCTGAA TGGACGGGCG ATCTTCGTCG GCAACAGCCT GCGCGGCCTG 
ATCCGCGCCG AACTGGTGGA AGAACAGCAC AGGGCTGTCG CTTAA 

 

Protein sequence

MDFTLIETLR WEPGQGFIRL DQHLRRLSRS ADALGFRQPI KPEAALKEVV HGDTPLRVRL 
AMNFRGKLEA AAVPFESVGE NTIWRLRIAQ KTRLNSEDTL YRHKTSRRDP YDAARAEFST 
EEADEVLLLN ERGEICEGTF TNVFVQGLDG MLITPPLTSG LIPGILRAEL IRDRKARADL 
LKPESLNGRA IFVGNSLRGL IRAELVEEQH RAVA