Gene Avi_3638 details

Gene Information

• Locus tag: Avi_3638
• Symbol: tktA
• ID: 7388053
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: -
• Start bp: 3023927
• End bp: 3025903
• Gene Length: 1977 bp
• Protein Length: 658 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 643652451
• Product: transketolase
• Protein accession: YP_002550633
• Protein GI: 222149676
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0021] Transketolase
• TIGRFAM ID: [TIGR00232] transketolase, bacterial and yeast

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATTTCTC CCGAAAAGCA CAACCGGATG GCCAATGCGA TCCGATTTCT GTCCATGGAT 
GCGGTCGAAA AGGCCAATTC CGGCCATCCC GGCATGCCGA TGGGCATGGC CGATGTCGCG 
ACGGTGCTGT TTACCCGCTT TTTGAATTTC GATCCCAAGG CGCCGAAATG GGCCAATCGC 
GACCGTTTTG TGCTGTCGGC TGGCCACGGC TCTATGCTGC TCTATTCGGT CCTTTACCTG 
ACCGGCTATG AAGACATCAG CATCGACGAC ATCAGGAATT TCCGCCAGCT CGGATCGAAA 
ACCGCAGGCC ATCCGGAATA TGGCCATCTC TCGGGCATCG AGACGACAAC CGGCCCGCTC 
GGCCAGGGTG TTGCCAATGC CGTCGGCATG GCAATTGCTG AAAAGAAGCT GGCGTCCGAA 
TTCGGCAGCG AGCTCATGCA TCACCACACC TATGCCATCG TTGGCGATGG CTGCCTGATG 
GAAGGCATCA GCCAGGAAGC GATTTCGCTG GCCGGCCATC TGAAGCTCAA CAAGCTGATC 
GTGCTCTGGG ACGATAACGG CATTTCCATT GACGGCGCGA TTTCGCTGGC CGACAGCACC 
GACCAGCATG GCCGGTTCCG CGCTTCGGGC TGGAACACCA TGGCTGTTGA CGGTCACGAC 
CCGGAAGCGA TTTCGGCTGC ACTGTCCGCC GCCCAGCTGT CCGAAAAGCC AACGATGATC 
GCCTGCAAGA CGGTGATCGG CTTCGGTTCT CCCAACAAGG CTGGCACCCA TAAGGTGCAC 
GGCTCGCCGC TCGGTGCCGA CGAAATTGCC GCCACCCGCA AGGCGTTGGG CTGGGCTGAC 
GAGGCGTTTC ACGTACCCGC CGACGTGCTG GACGCCTGGC GCGAAGCCGG TGCGCGTGGT 
GCCGCGACAC GTGCCGAATG GGAAAAGGGT CTGGAAGGCT CCGATCACAA GGCCGAGTTT 
ACCCGCCGCT TCGCTGGCAA GCTGCCGGAA GGTTTCGATG CTGCCATCGA CGCCTATAAG 
AAGAAGCTGG CCGAGACCAA GCCAACCCTT GCCACCCGCA AATCCTCCGA GGATGCGCTG 
GAAGTCATCA ATGGCGTGGT GATCGAGACG CTCGGTGGTT CTGCCGACCT GACCGGTTCC 
AACAATACCA AGACCAGCCA GACTGCGTCG ATCACGCCGA CCGATTTCTC GGGCCGTTAC 
GTGCATTGGG GCATTCGTGA GCATGGCATG GCGGCGGCGA TGAACGGCAT CGCCCTGCAT 
GGCGGTCTCA TTCCGTATTC CGGCGGCTTC CTGATCTTCT CGGATTATTG CCGTCCGTCG 
ATCCGTCTGG CCTCCTTGAT GGGCATTCGC GTCATTCACG TCCTGACCCA TGATTCCATC 
GGTCTTGGCG AAGACGGCCC GACCCACCAG CCGGTCGAGC AGATGGCAGC CTTGCGCGCC 
ATCCCCAACC TGATGATGTT CCGCCCAGCC GATGCCACGG AAGTGGCGGA ATGCTGGCAG 
ATCGCCTTGA CCCATACGGA TCGTCCGTCC GGCATTGCGC TGACCCGTCA GAACCTGATC 
GCGGCCCGCA CCGAATATTC GGCGGAAAAT CTGTCGGCCA AGGGCGGCTA TGAGCTGCTC 
GGCGCTGACG ATGCCAAGGT GTCGATCTTT GCCACCGGCT CGGAAGTCGA ACTGGCGATC 
CAGGCCCGCG CGGCGCTCGC CGCCAAGGGC ATTGCTGCCC GCGTCGTTTC CGTGCCGTGC 
TTTGAACTGT TCTTTGAGCA GCCAGAGGAA TACCGCAACG CGGTGATCGG CACGGCTCCG 
GTGAAGATCG GCGTTGAAGC GGCGATCCGT CAGGGCTGGG ATGAGATCAT CGGCTCGCAC 
GGCACCTTTA TCGGCATGAA GTCCTTCGGT GCTTCCGGCC CCTACAAGGA ATTGTACAAG 
CATTTCGGCA TCACTGTTGA AGCGATTGTC GAAGCGGCTG AAGCCAAGCT TTCCTGA 

 

Protein sequence

MISPEKHNRM ANAIRFLSMD AVEKANSGHP GMPMGMADVA TVLFTRFLNF DPKAPKWANR 
DRFVLSAGHG SMLLYSVLYL TGYEDISIDD IRNFRQLGSK TAGHPEYGHL SGIETTTGPL 
GQGVANAVGM AIAEKKLASE FGSELMHHHT YAIVGDGCLM EGISQEAISL AGHLKLNKLI 
VLWDDNGISI DGAISLADST DQHGRFRASG WNTMAVDGHD PEAISAALSA AQLSEKPTMI 
ACKTVIGFGS PNKAGTHKVH GSPLGADEIA ATRKALGWAD EAFHVPADVL DAWREAGARG 
AATRAEWEKG LEGSDHKAEF TRRFAGKLPE GFDAAIDAYK KKLAETKPTL ATRKSSEDAL 
EVINGVVIET LGGSADLTGS NNTKTSQTAS ITPTDFSGRY VHWGIREHGM AAAMNGIALH 
GGLIPYSGGF LIFSDYCRPS IRLASLMGIR VIHVLTHDSI GLGEDGPTHQ PVEQMAALRA 
IPNLMMFRPA DATEVAECWQ IALTHTDRPS GIALTRQNLI AARTEYSAEN LSAKGGYELL 
GADDAKVSIF ATGSEVELAI QARAALAAKG IAARVVSVPC FELFFEQPEE YRNAVIGTAP 
VKIGVEAAIR QGWDEIIGSH GTFIGMKSFG ASGPYKELYK HFGITVEAIV EAAEAKLS