Gene Avi_3622 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_3622 
Symbolpal 
ID7388041 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp3007564 
End bp3008097 
Gene Length534 bp 
Protein Length177 aa 
Translation table11 
GC content63% 
IMG OID643652439 
Productpeptidoglycan-associated lipoprotein 
Protein accessionYP_002550621 
Protein GI222149664 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins 
TIGRFAM ID[TIGR02802] peptidoglycan-associated lipoprotein 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.595111 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCCGCA CTGTAACCCC GGTAATGAGC CGCATGCAAA AGCTTGCCAG CAACCCCGCC 
ATTCTCGCTC TCGCCATGAC GCTGGCGCTG GCTGGCTGCG CTTCCAAGAA GAACATGCCC
AATAGCGCGT CCGAGCTTGG CCTTGGCGGC GCAGGTGCTG CAACACCCGG CTCTACCCAG
GACTTCACCG TCAATGTCGG CGACCGGATC TTCTTCGATA CCGACTCAAC CTCGATCCGC
GCCGACGCCC AGCAGACGCT GGACCGCCAG GCTCAGTGGT TGCAGCGTTA TTCGCAGTAT
CCGATCACCG TCGAAGGCCA TGCCGACGAA CGCGGCACCC GCGAATACAA CTTGGCGCTC
GGTGCCCGCC GTGCCGCCTC CACCAAGGCC TATCTCGTGT CGCGTGGCAT TCCGGCCAAC
CGGATCAAGA CGATTTCCTA CGGCAAGGAA CGTCCGGTCG CCACCTGCGA CGATATTTCC
TGCTGGTCGC AGAACCGTCG CGCCGTGACG GTTCTCGGCG GCTCTGGAAT GTAA
 
Protein sequence
MSRTVTPVMS RMQKLASNPA ILALAMTLAL AGCASKKNMP NSASELGLGG AGAATPGSTQ 
DFTVNVGDRI FFDTDSTSIR ADAQQTLDRQ AQWLQRYSQY PITVEGHADE RGTREYNLAL
GARRAASTKA YLVSRGIPAN RIKTISYGKE RPVATCDDIS CWSQNRRAVT VLGGSGM