Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_3622 |
Symbol | pal |
ID | 7388041 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 3007564 |
End bp | 3008097 |
Gene Length | 534 bp |
Protein Length | 177 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 643652439 |
Product | peptidoglycan-associated lipoprotein |
Protein accession | YP_002550621 |
Protein GI | 222149664 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
TIGRFAM ID | [TIGR02802] peptidoglycan-associated lipoprotein |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.595111 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCCGCA CTGTAACCCC GGTAATGAGC CGCATGCAAA AGCTTGCCAG CAACCCCGCC ATTCTCGCTC TCGCCATGAC GCTGGCGCTG GCTGGCTGCG CTTCCAAGAA GAACATGCCC AATAGCGCGT CCGAGCTTGG CCTTGGCGGC GCAGGTGCTG CAACACCCGG CTCTACCCAG GACTTCACCG TCAATGTCGG CGACCGGATC TTCTTCGATA CCGACTCAAC CTCGATCCGC GCCGACGCCC AGCAGACGCT GGACCGCCAG GCTCAGTGGT TGCAGCGTTA TTCGCAGTAT CCGATCACCG TCGAAGGCCA TGCCGACGAA CGCGGCACCC GCGAATACAA CTTGGCGCTC GGTGCCCGCC GTGCCGCCTC CACCAAGGCC TATCTCGTGT CGCGTGGCAT TCCGGCCAAC CGGATCAAGA CGATTTCCTA CGGCAAGGAA CGTCCGGTCG CCACCTGCGA CGATATTTCC TGCTGGTCGC AGAACCGTCG CGCCGTGACG GTTCTCGGCG GCTCTGGAAT GTAA
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Protein sequence | MSRTVTPVMS RMQKLASNPA ILALAMTLAL AGCASKKNMP NSASELGLGG AGAATPGSTQ DFTVNVGDRI FFDTDSTSIR ADAQQTLDRQ AQWLQRYSQY PITVEGHADE RGTREYNLAL GARRAASTKA YLVSRGIPAN RIKTISYGKE RPVATCDDIS CWSQNRRAVT VLGGSGM
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