| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3621 |
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| Symbol | tolB |
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| ID | 7388040 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 3006025 |
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| End bp | 3007332 |
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| Gene Length | 1308 bp |
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| Protein Length | 435 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643652438 |
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| Product | translocation protein TolB |
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| Protein accession | YP_002550620 |
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| Protein GI | 222149663 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
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| TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.578468 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGACAT TCTCACTCCT GCGTATCCTG ATCGTCCTCG TCGGCATGGC GGGCGCCTTT
GCCACGCCGG CCATGGCGCT GGTCGAGATC AATATCAATA AGGGCAATGT CGAGCCGATG
CCGATCGCCA TTCCCGATTT CCTGTCGGCC AATGGCATCG GCGCGAAGAT CTCGGCCGTG
GTGGAGGCGG ACCTCAAACG CTCCGGTCTG TTCGCCCCGG TCAATCACGG CGCCTTCATC
GACAAGCAGA TCAATCCCGA TCAGGCGCCC AACATGCAGA ACTGGACGGT GCTGAACGCC
CAGGCCCTGG TGGTTGGTCG CATTACCCAG GAAGGCGATG GCCGCTTGCG CGCCGAATTC
CGCCTGTGGG ATACCTATGC GGGCCAGCAG ATGAGCGGCC AGCAATTCTA TACCCAGCCT
GAAAACTGGC GTCGCGTCGC CCATATCATC GCCGACGCGA TCTATGAGCG CATCACCGGT
GAAAAAGGCT ATTTCGATAC CCGCATCGTC TTCGTGGCCG AAAGCGGCAC CAAGACCGAC
CGCAAGCGCC AGCTGGCCAT CATGGACCAG GATGGCGAAA ACGTCCGCAT GTTGACCAAT
ACCGCCAATC TGGTGCTGAC GCCGCGCTTT TCGCCGAACC GCCAGGAAGT GACCTATATG
TCCTTCGAGG GCAACCAGCC GCGCGTCTAC CTGCTGCAAC TGGAAACCGG ACAGCGCGAA
GTGGTCGGCA ATTTCCCCGG CATGACCTTC TCGCCGCGCT TCTCGCCGGA TGGTCAGCGG
GTGATCATGA GCCTGCAACA GGACGCCAAC AGTAACATCT ACACGATGGA CCTGCGCTCG
CGCACCACCA CCCGGTTGAC CAGCACGGCG GCCATCGATA CCTCCCCGTC CTATGCGCCG
GATGGACGCC GGATCGTGTT TGAGAGCGAC CGTGGCGGAC GCCAGCAGCT TTACGTGATG
AATTCCGACG GCTCCGGCCA GACCCGCATT TCCTTTGGCG AAGGCTCTTA CTCCACTCCG
GTCTGGTCGC CCCGCGGAGA CTTGATCGCC TTTACCAAGC AATCGGGCGG AAAATTCTCT
ATCGGCGTGA TGAAGCCGGA CGGTTCGGGT GAGCGGCTTC TGACCACCGG CTTCCATAAT
GAAGGCCCGA CCTGGGCGCC GAACGGCCGC GTGCTGATGT TCTTCCGCCA GGCCGCAGGC
TCAGGCGGAC CGCAGCTCTA TTCCATCGAC TTGACCGGCT ATAACGAGCA ATTGGTCAAA
ACTCCGAGCT TTGCGTCCGA CCCAGCCTGG TCGCCGCTTC TCGAATAG
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| Protein sequence | MKTFSLLRIL IVLVGMAGAF ATPAMALVEI NINKGNVEPM PIAIPDFLSA NGIGAKISAV
VEADLKRSGL FAPVNHGAFI DKQINPDQAP NMQNWTVLNA QALVVGRITQ EGDGRLRAEF
RLWDTYAGQQ MSGQQFYTQP ENWRRVAHII ADAIYERITG EKGYFDTRIV FVAESGTKTD
RKRQLAIMDQ DGENVRMLTN TANLVLTPRF SPNRQEVTYM SFEGNQPRVY LLQLETGQRE
VVGNFPGMTF SPRFSPDGQR VIMSLQQDAN SNIYTMDLRS RTTTRLTSTA AIDTSPSYAP
DGRRIVFESD RGGRQQLYVM NSDGSGQTRI SFGEGSYSTP VWSPRGDLIA FTKQSGGKFS
IGVMKPDGSG ERLLTTGFHN EGPTWAPNGR VLMFFRQAAG SGGPQLYSID LTGYNEQLVK
TPSFASDPAW SPLLE
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