Gene Avi_3619 details

Gene Information

• Locus tag: Avi_3619
• Symbol: tolR
• ID: 7388038
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 3004335
• End bp: 3004793
• Gene Length: 459 bp
• Protein Length: 152 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 643652436
• Product: protein TolR
• Protein accession: YP_002550618
• Protein GI: 222149661
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0848] Biopolymer transport protein
• TIGRFAM ID: [TIGR02801] TolR protein

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGCATGT CGGTAGGAGC AAATGGAGGC GGCGGTGGCC GTCGCGGCAG CAGGCGCCGG 
GGCGGCAAGC GCGGTCCCGT CAGCGAAATC AACGTCACGC CGCTGGTCGA CGTCATGCTT 
GTGCTGTTGA TCATCTTCAT GGTTGCAGCC CCGATGATGA CCGTCGGCGT GCCGATCGAC 
CTGCCGGAAA CCCAGGCCAG CGCCATGAAT TCCGATACGC AGCCGATCAC CATTTCGGTC 
AATCCGGCTG GCGAAATCTA TTTGCAGGAA AGCCCGATCC CGCTTGAGGA AATCGTTCCC 
AAGCTCCAGG CTATCGCCAC CACGGGTTAC AATGAACGCA TCTATGTGCG CGGCGACACG 
GCTGCTGCCT ATGGCACGGT TATGAAGGTT ATGGCGCGCA TTTCTTCGGC TGGCTACAAG 
AATATCGGCC TTGTGACCCT GCAAGAACAG GACAAGTGA 

 

Protein sequence

MGMSVGANGG GGGRRGSRRR GGKRGPVSEI NVTPLVDVML VLLIIFMVAA PMMTVGVPID 
LPETQASAMN SDTQPITISV NPAGEIYLQE SPIPLEEIVP KLQAIATTGY NERIYVRGDT 
AAAYGTVMKV MARISSAGYK NIGLVTLQEQ DK