Gene Avi_3616 details

Gene Information

• Locus tag: Avi_3616
• Symbol: ybgC
• ID: 7388036
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 3002665
• End bp: 3003114
• Gene Length: 450 bp
• Protein Length: 149 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 643652434
• Product: tol-pal system-associated acyl-CoA thioesterase
• Protein accession: YP_002550616
• Protein GI: 222149659
• COG category: [R] General function prediction only
• COG ID: [COG0824] Predicted thioesterase
• TIGRFAM ID: [TIGR00051] acyl-CoA thioester hydrolase, YbgC/YbaW family; [TIGR02799] tol-pal system-associated acyl-CoA thioesterase

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.47995
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCAATG ACTTTTCCAT TTCCGGCCAG CTGATCGAAG GCGGCCATCG TCTCGTCCAG 
CGGGTCTATT ATGAGGACAC GGATTTTTCC GGCCTGGTCT ATCACGCCCG CTATCTGCAT 
TTCCTTGAGC GCGGACGCAC TGATTATCTG CGCTGTCTCG GCTGCGAACA GAGCGAGCTG 
ATCAATGCCG ATGAGGAAGG GCTGGTTTTC GTCGTGCACC GCATGGAGCT GGATTTCAAA 
AGCCCGGCGC GGATGGACGA CATCCTTGTT ATCGAGACGA TCACCGAAAA GGCCGGGGGC 
GCCAAGATGG TGCTGCGGCA AACCATTAAT AGCGGTGACC GCCGGTTGAT CGACGCAAAA 
GTTGTGATTG CCGTCGTTAA CAAATTTGGG CGTCCGCGCC GCCTGCCGGA AACAATCGCC 
GAGAAGTTCC TCGGTTTCAC GCCCGGCTGA 

 

Protein sequence

MTNDFSISGQ LIEGGHRLVQ RVYYEDTDFS GLVYHARYLH FLERGRTDYL RCLGCEQSEL 
INADEEGLVF VVHRMELDFK SPARMDDILV IETITEKAGG AKMVLRQTIN SGDRRLIDAK 
VVIAVVNKFG RPRRLPETIA EKFLGFTPG