Gene Avi_3593 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_3593 
Symbol 
ID7388021 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp2988593 
End bp2990011 
Gene Length1419 bp 
Protein Length472 aa 
Translation table11 
GC content60% 
IMG OID643652419 
Productcytochrome ubiquinol oxidase subunit 1 transmembrane protein 
Protein accessionYP_002550601 
Protein GI222149644 
COG category[C] Energy production and conversion 
COG ID[COG1271] Cytochrome bd-type quinol oxidase, subunit 1 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTCGATC AATTCGATGC CGTTCTTCTC GCGCGAATAC AGTTTGCCTT CACGGTTTCC 
TTCCACATTA TCTTTCCAGC CTTCTCAATC GGGCTGGCCA GCTATCTGGC CGTGCTGAAC
GGCTTGTACC TCTGGACCAA AAAACAGGTC TATGTCGAGC TGTTCAATTT CTGGAAGACG
ATCTTTGCCG TCGCCTTCGG CATGGGCGTG GTGTCGGGCA TTGTGATGTC CTATCAGTTC
GGCACCAATT GGTCGGTGTT CTCAGATAAG GCCGGGCCGG TGATCGGGCC GCTGATGGGC
TATGAGGTGC TGACGGCTTT CTTTCTTGAG GCAGGCTTCC TGGGTGTGAT GCTGTTCGGG
CTGCAACGGG TCGGGCCGAA GCTGCATTTC TTCGCCACCT GCATGGTGGC TTTCGGCACC
TTGATTTCGG CCACCTGGAT TCTCGCCGTC AATTCCTGGA TGCAGACCCC CGCCGGTTTC
GGCATGAACG ATAAAGGCCA GTTCATCCCG CTCGACTGGT GGGCGGTGAT CTTCAATCCG
TCCTTCCCCT ATCGGCTGGT GCATATGGTG TTGGCCGCCT ATCTCACCAC GGCGCTTGTG
GTGGGGGCGG TGGGTGCCTG GCATCTGCTG CGCAAGACCG CGCCGCGCCG TGCTGGCAAG
ATGTTTTCGA TGGCGATGGG CATGGTCGCC GTAGTTGCGC CGATCCAGAT CCTGGCCGGT
GATGCCCACG GGCTGAACAC ATTGGAACAT CAGCCAGTGA AAGTCATGGC CATGGAGGGT
CATTACGACA GCCATCCCGA TGGCGCGCCG CTCATCCTGT TCGGCATTCC CAATCCCGCC
GAAAAACGGG TGGATTATGC CGTCGAGATT CCAAAACTCT CCAGCCTGAT CCTCAAACAC
GACCTCAATG CGCCGCTGGC CGGGCTGGAT ACCGTGCCGG ATGAGCTTGA GCCGCCGGTT
GCGGTGATTT TCTGGTCGTT CCGCGTCATG GTTGGCCTGG GCTTTGCCAT GCTGGGACTG
GGTCTCTGGA GCCTGTGGGC GCGCTATCGC CGCACACTCT ATAGCAATGA CTGGCTGCAC
CGCGCCGCTT TTGCCATGGG ACCCGCGGGC TTCATCGCGG TATTGAGCGG CTGGATCACC
ACCGAAGTGG GTCGCCAGCC CTACACGATC TACGGTCATT TGCTGACGGC GCAGTCCCAT
TCGCCAATTG CCGCGCCTGC GGTGGCGGCC TCGCTGATCG CCTTCATCAT CGTCTATTTT
TTCGTGTTCG GGGCGGGCAC CTTCTACATT TTGCGGCTGA TGGCGCGGCT GCCACGCGAT
CCGACGCCGG AAATCGGCGA TGCACCACTG CGCAGTACCG GGATCACACC CGGCCCCGCT
CACCACACCC ACGGCAAAGG AGGCTCCCAT GCCCTTTGA
 
Protein sequence
MFDQFDAVLL ARIQFAFTVS FHIIFPAFSI GLASYLAVLN GLYLWTKKQV YVELFNFWKT 
IFAVAFGMGV VSGIVMSYQF GTNWSVFSDK AGPVIGPLMG YEVLTAFFLE AGFLGVMLFG
LQRVGPKLHF FATCMVAFGT LISATWILAV NSWMQTPAGF GMNDKGQFIP LDWWAVIFNP
SFPYRLVHMV LAAYLTTALV VGAVGAWHLL RKTAPRRAGK MFSMAMGMVA VVAPIQILAG
DAHGLNTLEH QPVKVMAMEG HYDSHPDGAP LILFGIPNPA EKRVDYAVEI PKLSSLILKH
DLNAPLAGLD TVPDELEPPV AVIFWSFRVM VGLGFAMLGL GLWSLWARYR RTLYSNDWLH
RAAFAMGPAG FIAVLSGWIT TEVGRQPYTI YGHLLTAQSH SPIAAPAVAA SLIAFIIVYF
FVFGAGTFYI LRLMARLPRD PTPEIGDAPL RSTGITPGPA HHTHGKGGSH AL