Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_3583 |
Symbol | |
ID | 7388015 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 2980829 |
End bp | 2981710 |
Gene Length | 882 bp |
Protein Length | 293 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 643652413 |
Product | transcriptional regulator AraC family |
Protein accession | YP_002550595 |
Protein GI | 222149638 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCAGCA AGATCGACGG ACTGTCCGTC TCCTCCGGCC TGCACCGGCG CTATTGGAAC GGCATGGTCG CCGATCTCTG GTCGGTGGAT TGCCAAAGCG ACGCGGGTGG CCAGTATGTC AGCAGCGATC CACGTCTGTT CATTCTTTTG GACGCCGCAG GCGAGGATGG GGCCGACCTC AGCATGGCTG AAGGCGGTGG CAAGCGGATT TCCGGAGCGA TGGCCAGGGC AGCCCATTTC ATTCCCGCCG GGTTGGAACT ATCGACTGCG ATCACCGGGG TGAAAAGCCT ACGGCATCTG GACCTGCATT TCGATGCCGA TATCTTGCGG CACCGACTGG GCGAGGATGC CGGGCTGGCG GCATTGCACC AGCCGCGCTA CCTTCTTGAT GATCCTCGAC TGCTGGCCCT GGCCGAACTG ATCGCCGCCG ATGTCGCCAA TCCGCATCCC CTGCACGATC TCTATGGCGA TGGGCTGGTC AGCGCGCTGC TGATCGACGT GCTGAACATT CGCCCCACCC CTACGCACCA ACTGCCCAAC CGCAAACGCA GCAAGCTGGC CGCCTGGCAG CTCCGCCGGG TTTGCGATTT CATCGAGGCC CATTGCCTGC GCACCATCCG GCTGGAGGAA TTGGCCGGGC TGGCAGGCCT GTCACCCACC TATTTCAGCC ACGCCTTCAA GGCCTCGACG GGCCTGTCGC CGCATCAATG GCAGATGAAG GCGCGGATCG AAACGGTCAA GCAGCGGCTG CGCGACCCCG CCGTACCGCT GACGGTAATT GCCGCCGAAA CCGGCTTTGC CGACGCCGCC CATTTTGCCC GCAGCTTTCG CCGCGCCGTC GGCCTGTCGC CGTCCGAGTG GCGGCGAGTC CGGCTCAATT GA
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Protein sequence | MTSKIDGLSV SSGLHRRYWN GMVADLWSVD CQSDAGGQYV SSDPRLFILL DAAGEDGADL SMAEGGGKRI SGAMARAAHF IPAGLELSTA ITGVKSLRHL DLHFDADILR HRLGEDAGLA ALHQPRYLLD DPRLLALAEL IAADVANPHP LHDLYGDGLV SALLIDVLNI RPTPTHQLPN RKRSKLAAWQ LRRVCDFIEA HCLRTIRLEE LAGLAGLSPT YFSHAFKAST GLSPHQWQMK ARIETVKQRL RDPAVPLTVI AAETGFADAA HFARSFRRAV GLSPSEWRRV RLN
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