| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3576 |
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| Symbol | mnmA |
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| ID | 7388009 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 2972422 |
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| End bp | 2973630 |
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| Gene Length | 1209 bp |
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| Protein Length | 402 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 643652406 |
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| Product | tRNA-specific 2-thiouridylase MnmA |
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| Protein accession | YP_002550589 |
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| Protein GI | 222149632 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain |
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| TIGRFAM ID | [TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGCGCC CCGTGAATAC GCTGGATTTT GACAAGAGAC CGGAAGATAC CCGCGTTGTC
GTCGCCATGT CAGGCGGCGT CGATAGTTCT GTCGTGGCCG GAATCTTGAA ACGCGAAGGC
TATGATGTGC TGGGCATCAC CCTCCAGCTT TACGACCATG GCGCCGCCGT GCACCGGGCC
GGGTCCTGTT GCGCCGGTCA GGATATCGAC GATGCGCGCC GGGTCTGCGA GACGCTGGGC
ATTCCCCATT ATGTGCTGGA TTACGAACAG CGCTTCCGCG ACACGGTGAT CAATCCGTTC
ATGGACAGCT ATATCGCCGG CGAAACGCCG ATCCCCTGCG TGGCCTGCAA CCAAACGGTC
AAATTCGCCG ATCTTCTGGC CACCGCCCGC GAGCTTGGGG CCGACGCGCT GGCCACCGGT
CACTATATCC GTTCACGCGC CACGCCTCTG CCGAACGATC CGGGCCACCG CGCCCTGTTT
CGTCCCATCG ACAGCGAGCG CGACCAGAGT TATTTCCTGT TTGCCACCAC CCAGGAACAG
ATCGATTATC TGCGCTTTCC GCTGGGCGGC CTGTCCAAGG CCGAGACCCG TAAGCTGGCC
GAGGACATGG GCCTCGTCGT CGCGCAAAAG GCCGACAGCC AGGATATCTG TTTCGTGCCG
CAGGGCAAAT ATGCCGATAT CATCAACAAG CTGAAGCCCA ACGCGGCATT GAGCGGCGAT
ATCGTCCATC TCGATGGCCG GGTTCTGGGC CAGCATGAAG GCATCCTGCA CTATACGATC
GGCCAGCGCA AAGGCTTGGG CGTTGCCACC GGCGAGCCGC TTTACGTCGT CTATCTGGAC
GCCCGGTCGC GCCGGGTCAT CGTCGGGCCG CGTGAAGCGC TGGAAACCCG CCGCGTCTAT
CTGCGCGACA TCAACTGGCT GGGCGACCGC GCCATCGAGG ATGAGGCAAG CGGCGGTTTT
GCCTGTTTTG CCAAGGTGCG CTCCACCCGT CCCCCTGCCC CGGCCCATCT GCATGCCGAT
GAAACCGGCA TTTATGTAGA CCTCGACATG GGAGAAGCTG GCGTTGCGCC GGGACAGGCC
TGCGTGCTCT ATTCGGGCGA AGGCGCCGAC GCCCGTGTCT ATGGCGGCGG CTTTATCGAA
CGCTCGGAAC GCCAGGCCGA AGCCGAGACC TTCCTGAAGG CGCTTCTGGC GGGCGCGCAA
GCCGCCTAA
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| Protein sequence | MTRPVNTLDF DKRPEDTRVV VAMSGGVDSS VVAGILKREG YDVLGITLQL YDHGAAVHRA
GSCCAGQDID DARRVCETLG IPHYVLDYEQ RFRDTVINPF MDSYIAGETP IPCVACNQTV
KFADLLATAR ELGADALATG HYIRSRATPL PNDPGHRALF RPIDSERDQS YFLFATTQEQ
IDYLRFPLGG LSKAETRKLA EDMGLVVAQK ADSQDICFVP QGKYADIINK LKPNAALSGD
IVHLDGRVLG QHEGILHYTI GQRKGLGVAT GEPLYVVYLD ARSRRVIVGP REALETRRVY
LRDINWLGDR AIEDEASGGF ACFAKVRSTR PPAPAHLHAD ETGIYVDLDM GEAGVAPGQA
CVLYSGEGAD ARVYGGGFIE RSERQAEAET FLKALLAGAQ AA
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