| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3566 |
|---|
| Symbol | |
|---|
| ID | 7388829 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 2960422 |
|---|
| End bp | 2962428 |
|---|
| Gene Length | 2007 bp |
|---|
| Protein Length | 668 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643652397 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002550580 |
|---|
| Protein GI | 222149623 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5267] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTTTCG CGAATTGTTT ATTCAATCGG CTTGTTTTGC CGATGGTTTT GCTTGTCCTT
TTATCTTTAT CAGCGCGCGC CATGGACGTT GGCGAGGCGC GTCATCTATT GCAGCGCCTT
ACCTTCGGTG CCAGTCCGGC TGAAGTGACC ACTTTGGTGA AACTGACGCG GGAAGAGGCT
GTCGACCGTT TTCTTGACAG TCTCGCCCAT CCGGAGTTAC CGGAGCCGCC GCCGTTTGTT
TCCCGCCCAA GGCCGGATTA CTGGGCGAGT GGCTGGGAAA ACCGCGACAT GATCTTGCAA
CATGTGGCGG AGCGCGATCA GATGCAGGCG GTGTGGATCA GCCATATGAT CGCCACCGAT
ACGCCTTTTG CCGAAAGACT GGCGTTGTTC TGGCATGGTC ACTTCGTGTC GCGCTTCGAT
CCGGGCCGGG TCAGTGCGCC GCTCTTTGAT CAGATCGCGC TGTTTCGCCG GGAAGGCGGC
GGAAATTTTC GGGTCCTGCT GCGGGATGTC CTGCGCGATC CGATGATGCT GACCAGCCTG
GACAATGTCT GGAACACCAG CAGCCGTCCC AATGAAAACC TGGCGCGTGA ACTGATGGAA
TTGTTCACGC TTGGCATCGG ACACTATGAC CAGCGTGACG TGCGCGAGGT GTCCCGGGTC
CTGGCGGGGC ATGGCGTGGA TTTTGAAGGT GGCTGGCGCT ATCGCTTCGC TGTCGATCAG
GCGGATACCG GGGAAAAGAC TGTTTTAGGC CAGCCTATTG CGGCGGGCAG TCAGGATCAG
ATTGATCGCC TGACCGATAT TCTCCTGGCG CAACCGCAAA CAGCCGAGTT TATTGCCGGA
AAATTTTATG CCGCCTTCGT TTCGATACGT CCGAACCCTG AGGCCACCAA CCGGCTGGCG
GGTGTCTTGC GCGATCACGA TTATGAGCTG CGGCCCTTCT TGCGCGCCTT GTTGCTGAGT
CCGGAGTTCT GGAGCCCGGC CAACAGAGGC GATCTGGTCA AATCGCCGAT TGATCTCGTT
GTCGGGTTCT GCCGCAGCTT CGGTCTGACT CCGCCGGACG CGATGATTTT GGTAACCTAT
CTCGATAAGC TTGGGCAGAC ACCGTTCATG GCACCGTCCG TTGCCGGTTG GCGCGAGGGG
ACGTCTTGGC TGAACATGAA GACCCTGGTG CTTCGGCGGC TTGTGGTCTC CAGGCTTTGG
GATGCGATGC GGGTTGCTGA TCGCACCCCC AAACCAGGTG ATCTCGCCAT CCGTTTCAGC
TCAGAATTTA TCATGGTGCC GACCGTGTTT ACCGTGCGGG TTAATGGGGC TGAGGTTGCC
ACCGTCAGAC AAACCATTGG ACTGGATCTG CAAAAGCAGC GGGCCCAGGG CGATAATGGT
GGTTTGAAAC CGATGTGGGA AACGGCAATT ATCCCGGCGG AAAACCTGCC CGCGGATATC
CGCAGTGTGG AGATAACCCA TGTTTCCAGC GATCCTGACA GTCGCCTGTT CGTCAATTGG
GTCGAGGTTG CGGGACGCCG CTATCCGCCG CAGCTTAGCC GCTGGAGCCC GTCGGATGCG
CCCTGTGCGG GTGCCCCTCG CGGCATGTTC TACTGCAATG TGGGTCTGGT GTTCGATATA
GCGCCTTTCG ATACGCAGCA GGCGACGATA GATGATCTGC GGGCCGACCA TAACAGTCAC
ATTGAATATA CGACGGCGCG TCTGCAATCA AAAGATGTAT TCGATGCCCG GGAGCCTCTC
GAACAGGCAT TCGAGGTGAT GATGGCGCGT GTTGGCGAGG GGTCCATCAG CCGTGAGAAC
CTTGCTGGGC AATGGCTTCT GGCGCGGCCT GTCTTGTCTG CCCGGGCGGA AAAGCCAGCG
CTCGTTCCCT CCGTTGCCCA GCCCGTGATT CAACCAATTG CCATGACAAT GCAGCCTGTC
GGCAAGACCG GCGATGCTGA ACGAAGTTCG GCACTGATCG ATCTTCTCCG GTCGATGACG
ACAGATCCGC AATACAACCT TAAGTAA
|
|---|
| Protein sequence | MIFANCLFNR LVLPMVLLVL LSLSARAMDV GEARHLLQRL TFGASPAEVT TLVKLTREEA
VDRFLDSLAH PELPEPPPFV SRPRPDYWAS GWENRDMILQ HVAERDQMQA VWISHMIATD
TPFAERLALF WHGHFVSRFD PGRVSAPLFD QIALFRREGG GNFRVLLRDV LRDPMMLTSL
DNVWNTSSRP NENLARELME LFTLGIGHYD QRDVREVSRV LAGHGVDFEG GWRYRFAVDQ
ADTGEKTVLG QPIAAGSQDQ IDRLTDILLA QPQTAEFIAG KFYAAFVSIR PNPEATNRLA
GVLRDHDYEL RPFLRALLLS PEFWSPANRG DLVKSPIDLV VGFCRSFGLT PPDAMILVTY
LDKLGQTPFM APSVAGWREG TSWLNMKTLV LRRLVVSRLW DAMRVADRTP KPGDLAIRFS
SEFIMVPTVF TVRVNGAEVA TVRQTIGLDL QKQRAQGDNG GLKPMWETAI IPAENLPADI
RSVEITHVSS DPDSRLFVNW VEVAGRRYPP QLSRWSPSDA PCAGAPRGMF YCNVGLVFDI
APFDTQQATI DDLRADHNSH IEYTTARLQS KDVFDAREPL EQAFEVMMAR VGEGSISREN
LAGQWLLARP VLSARAEKPA LVPSVAQPVI QPIAMTMQPV GKTGDAERSS ALIDLLRSMT
TDPQYNLK
|
|---|
| |