| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3538 |
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| Symbol | rpoH |
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| ID | 7388804 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 2931954 |
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| End bp | 2932856 |
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| Gene Length | 903 bp |
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| Protein Length | 300 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643652372 |
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| Product | RNA polymerase factor sigma-32 |
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| Protein accession | YP_002550555 |
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| Protein GI | 222149598 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0192521 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCCCGCA ATAGCTTGCC TTCGATTACC GCCGGTGAAG GCGGACTGAA CCGATACCTG
GATGAGATCC GCAAGTTCCC AATGCTGGAA CCCCAGGTGG AATATATGCT GGCCAAGCGC
TATGCCGAGC ATGGCGACCG CGATGCCGCG CACCGGCTTG TCACCAGCCA TTTGCGTCTC
GTGGCGAAGA TTGCCATGGG TTATCGCGGC TACGGCCTGC CGATTGGCGA AGTCGTCTCT
GAGGGCAATG TCGGCCTGAT GCAGGCTGTC AAAAAATTCG ATCCCGAACG CGGCTTCCGG
CTTGCTACCT ATGCAATGTG GTGGATCAAG GCCTCGATTC AGGAATATAT CCTGCGCTCC
TGGTCGCTGG TGAAAATGGG CACGACCGCC AACCAGAAGC GGCTGTTCTT CAACCTGCGC
CGCCTGAAGG GCAAGATCCA GGCCATCGAG GAAGGCGACC TGAAGCCGGA CCAAGTCACG
GAGATCGCCA CCAAGCTGAA GGTCAGCGAG GAGGAAGTGA TTTCCATGAA CCGCCGCCTG
TCGGGCGATG CCTCGCTGAA CGCGCCGATC CGCGCCAGCG AAGGTGAATC CGGCCAGTGG
CAGGATTGGC TGGTGGACGA TCATGACAGC CAGGAAGACA CGCTGATCGA GCAAGATGAG
CTGGAAACCC GGCGCAACAT GCTGTCGCGC GCCATGGGCG TGCTGAACGA CCGCGAACGC
CGCATCTTCG CCGCCCGCCG CCTGGCCGAA GAGCCGGTGA CGCTGGAAGA ACTGTCATCC
GAGTTCGACA TCAGCCGCGA ACGTGTGCGC CAGATCGAAG TGCGCGCTTT TGAAAAGGTT
CAGGATGCTG TCCAGAAGGA CGCACTGGAA CAGGCCAAGG CGTTGCGCGT CGTCGAGTCC
TGA
|
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| Protein sequence | MARNSLPSIT AGEGGLNRYL DEIRKFPMLE PQVEYMLAKR YAEHGDRDAA HRLVTSHLRL
VAKIAMGYRG YGLPIGEVVS EGNVGLMQAV KKFDPERGFR LATYAMWWIK ASIQEYILRS
WSLVKMGTTA NQKRLFFNLR RLKGKIQAIE EGDLKPDQVT EIATKLKVSE EEVISMNRRL
SGDASLNAPI RASEGESGQW QDWLVDDHDS QEDTLIEQDE LETRRNMLSR AMGVLNDRER
RIFAARRLAE EPVTLEELSS EFDISRERVR QIEVRAFEKV QDAVQKDALE QAKALRVVES
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