Gene Avi_3518 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_3518 
Symbol 
ID7388787 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp2916112 
End bp2917317 
Gene Length1206 bp 
Protein Length401 aa 
Translation table11 
GC content59% 
IMG OID643652355 
ProductMFS permease 
Protein accessionYP_002550538 
Protein GI222149581 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00710] drug resistance transporter, Bcr/CflA subfamily
[TIGR00880] Multidrug resistance protein 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACCGAA AAACCCTCTT CCTAGCCATC TCGATCGGCA TGATCTGTGC CATCGGGCCG 
CTCGCAACAG ATATGTATCT GGGCGCCATG CCGCTGATGG CCACGAGCTT ATCGACCACG
GCCGCGACGA TCCAGCTGTC CGTCATGACG TTCTTTTCCG GCTTCACCAT CGGGCAAATG
TTCTACGGAC CGATTTCAGA CAGGACCGGC CGTAAGCCGA TAATTTATGT GGCATTGGCG
ATCTTCTGCC TGTCCTCGTT CGGCTGCCTG ACCGCATCGA CCGGCGAGCA ATTGCTGGTA
TGGCGCTTCA TGCAGGGCGT GGGCGGCTCG ATTGGCATGG TCATCGGAAC AGCCATCATC
CGCGACACGC ATACCGGCCC GGCAGCCACA AAGCTGATGT CCATGGTGAT GCTGGTCATC
GGCGTCGCCC CGATCCTCGC ACCCTTTGCT GGCAGCCTCA TTCTGAAAAT AGCCAATTGG
CAGATGATTT TTGTATTGCT CGGCTGCTAT GCGGCGCTGT GCTTCGTGGT CGTTGCGCTC
TGGCTTCCCG AAACCCGGTT GCCGGCCGAC CGCGCTTCCA GTAAGCCCAG CCGCGCCCTC
ATCACCTATG GCGGCTTGCT GATCAGCCGC AATTTCATCC CCTATGCGGG CACCATGGCG
CTCGTCCAGG GCGGATTCTT CGCCTATATC GCCGGGTCGT CTTTCATGCT GATGACGGTC
TATGGGCTTT CGGCCATCAG TTACTCGATT ATCTTCAGCA CCAACGCAAT CGGCCTTGGT
ATCGGCACGC AAATCTGCAA CCGGTTTGCC ACACGTTTTG GTGTCAAGGC CGCGGTACGC
GGCTCCGTGC TGCTCTATAC GGTTATCGCC CTGATACTGG TCGCCACCCA GCTGACCGGC
ACCGATAGCC TGACGGTCAC CTGCATTCTG ATGTTTATTC TCGTCATGTC CATCGGCGGC
ATCATGCCGG GTTGCAACGT GCTGGCAATG GAAGCCCACG GCTCGATTGC CGGAACTGCC
GCCGCCCTGG CGGGAGGCCT TTCCTTTGGT GCAGGCGCCC TGTCCAGTTT TGTCCTTGGA
TTGCTGGAAA ACGGCACCGC CCTGCCTCTG GTCTGCGTCA TGGCCGGTTG CGGTATCCTG
GCCGTACTTG TCACCCAGGT ATTTTTCGAG GATCGGCAAG AGACAACAGT TCCTGAAAAA
GCCTGA
 
Protein sequence
MNRKTLFLAI SIGMICAIGP LATDMYLGAM PLMATSLSTT AATIQLSVMT FFSGFTIGQM 
FYGPISDRTG RKPIIYVALA IFCLSSFGCL TASTGEQLLV WRFMQGVGGS IGMVIGTAII
RDTHTGPAAT KLMSMVMLVI GVAPILAPFA GSLILKIANW QMIFVLLGCY AALCFVVVAL
WLPETRLPAD RASSKPSRAL ITYGGLLISR NFIPYAGTMA LVQGGFFAYI AGSSFMLMTV
YGLSAISYSI IFSTNAIGLG IGTQICNRFA TRFGVKAAVR GSVLLYTVIA LILVATQLTG
TDSLTVTCIL MFILVMSIGG IMPGCNVLAM EAHGSIAGTA AALAGGLSFG AGALSSFVLG
LLENGTALPL VCVMAGCGIL AVLVTQVFFE DRQETTVPEK A