| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3515 |
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| Symbol | livH |
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| ID | 7388785 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 2914003 |
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| End bp | 2914905 |
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| Gene Length | 903 bp |
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| Protein Length | 300 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643652353 |
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| Product | ABC transporter membrane spanning protein |
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| Protein accession | YP_002550536 |
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| Protein GI | 222149579 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
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| TIGRFAM ID | [TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGATTATT TCATCCAGCA GCTTATCAAC GGGCTGACGC TTGGCTCGAT TTATGGCCTG
GTGGCGATTG GTTATACGAT GGTCTACGGG ATTGTCGGCA TGATCAACTT TGCCCATGGC
GATATTTTCA TGCTCGGCGG TTTTGCCGCC TTGATTGTTT TTTTGCTTCT CACGACATTT
TTTGCAGGCA TTCCAGTGGC TTTGGCGCTG CTGATCATGT TGGTTGTATC AATGTTGATG
ACCGGTTTGT GGAACTGGAC CATCGAGCGC GTCGCCTATC GGCCTCTGCG CGGGTCCTTC
CGGCTAGCGC CGCTGATTAC GGCGATTGGC ATGTCGATTG CGCTGTCCAA TTTCATTCAG
GTCGCGCAAG GCCCTCGCAA CAAGCCAATT CCGGCGCTGG TCAATGACGT CTATCATTTC
GGCGCCATCA CGGTGTCGTT GAAGCAGATG ATCATCGTTG CGGTAACTGC GGTGCTGCTG
GCGGCCTTCT GGTATATTGT CAACAAGACG CCGCTTGGCC GTGCTCAGCG CGCCACCGAG
CAGGACCGCA AGATGGCGGC CCTTTTGGGT GTCGACGTCG ACCGCACCAT TTCCGTCACC
TTCGTGATGG GAGCGGCGCT GGCGGCGGTG GCTGGTACCA TGTATCTGAT GTATTACGGG
GTTGCCTCTT TTACCGATGG CTTCATTCCC GGCGTCAAGG CCTTTACGGC GGCGGTTCTG
GGCGGCATCG GCTCTTTGCC GGGCGCTGTT CTCGGCGGCC TGCTGATCGG CCTGATCGAA
TCCCTGTGGT CGGCCTATTT CACCATCGCC TACAAGGATG TCGCCACGTT CGGCATCCTG
GCTTTTGTGC TGATTTTCAA ACCGACCGGC ATCCTGGGCC GTCCCGAAGT CGAGAAGGTC
TGA
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| Protein sequence | MDYFIQQLIN GLTLGSIYGL VAIGYTMVYG IVGMINFAHG DIFMLGGFAA LIVFLLLTTF
FAGIPVALAL LIMLVVSMLM TGLWNWTIER VAYRPLRGSF RLAPLITAIG MSIALSNFIQ
VAQGPRNKPI PALVNDVYHF GAITVSLKQM IIVAVTAVLL AAFWYIVNKT PLGRAQRATE
QDRKMAALLG VDVDRTISVT FVMGAALAAV AGTMYLMYYG VASFTDGFIP GVKAFTAAVL
GGIGSLPGAV LGGLLIGLIE SLWSAYFTIA YKDVATFGIL AFVLIFKPTG ILGRPEVEKV
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