| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3471 |
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| Symbol | |
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| ID | 7387071 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 2875494 |
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| End bp | 2876222 |
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| Gene Length | 729 bp |
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| Protein Length | 242 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643652317 |
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| Product | GGDEF family protein |
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| Protein accession | YP_002550500 |
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| Protein GI | 222149543 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTTCGT CCGTTTCCCT GGCACTTGGC TTTCAGATCG TTGCCCTGCC GTTCTGTTGG
GTGCTGGGTC TGGTGCCGAT GCCGATCATC GATGCGGTCA AGCTCAGCGT GGCGATGAGT
TGGTTGTTGG GCAGTTTCGT GGCCACATTC ACCGGCGTCT TTGTGGCGCG TGAAATCCGT
AGTCTCGCCA TCGCCAAGGC AAAATACGAG CATCTGAGCA GGATTGACGG TCTGTCCGGC
CTGCTGAACC GGCGTGCCTT TTCGGAGGCG CTGGACCAGA CGGAGGGGAA CGCTTCGCTG
GCCATCGCCG ATCTCGATTG GTTCAAGTCG ATCAACGATG CTTACGGCCA CAGCGCCGGC
GATTTCGTCA TTCGGGCCGT GGCAGACATT CTGTGCCATT TCGCCAATGA TCCGCATGTC
ACGGCCAGGC TTGGCGGCGA GGAATTCGGT TTGATCATCC AAGGCGACAC GATCCAGCAG
CGGTTTGAGC GGATCGACAT GATCCGCCGC AGTATTTCCG ACCTTCGGCT GCATTTCGAC
GGTCGGTTGA TTTCGACATC CATCTCGATC GGCGTTGCTG AAATTTCGCC GGAAAGGCGG
CCGGAAGTGG TCTATGCGGC GGCCGACCGC GCGCTTTACC GTGCCAAGGC CAATGGCCGC
AACTGTATCG TGCATGAAAT GACCCATGGC CCGCAGCCGT TGAAGCAGGC TATCCAGGCC
GTCTCCTAA
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| Protein sequence | MFSSVSLALG FQIVALPFCW VLGLVPMPII DAVKLSVAMS WLLGSFVATF TGVFVAREIR
SLAIAKAKYE HLSRIDGLSG LLNRRAFSEA LDQTEGNASL AIADLDWFKS INDAYGHSAG
DFVIRAVADI LCHFANDPHV TARLGGEEFG LIIQGDTIQQ RFERIDMIRR SISDLRLHFD
GRLISTSISI GVAEISPERR PEVVYAAADR ALYRAKANGR NCIVHEMTHG PQPLKQAIQA
VS
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