| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3463 |
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| Symbol | |
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| ID | 7387064 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 2866966 |
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| End bp | 2868102 |
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| Gene Length | 1137 bp |
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| Protein Length | 378 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643652310 |
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| Product | HlyD family secretion protein |
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| Protein accession | YP_002550493 |
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| Protein GI | 222149536 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAAGCGC AATCTACTGA GCCAACAGCC AGCACCGATG CCCAGCTCCC GGCCATCGTC
GTTGCCAAAG CCAGCACCCA GAGCCTGACC GACAAGGTGA TCGGCACCGG AAGCGTCAAG
GCCGTCGAGG AAATCTACGT CCAGCCTGAA GTGGATGGAA TAGCCATTCG CAATCTTCTG
GCCGATGTCG GCGACAAGGT GAAGGCGGGT CAGGTTCTGG CAACGCTGGA TGGCGACAGC
CTGATCCTGC AAAAGGCGCA GTATGCCGCC AACCAGGCCA AGGCCGAGGC CTCTCTTGCC
CAGTACAAGA TCCAGTTGAT CGATGCGCAG GCCAGTGCAG CAGAAGCGGA ACGCCAATTG
GCGCGCGGCC AGTCGCTGGT CTCCGGCGGC ACGATTTCCA CCGCTCAGGT CCAGCAATAC
GAAACATCCG CCATCAATGC CCGCAACAAG GTGGACAGCG CCCGCCAGTC CATCGCCATT
GCCGAGGCCG AATTGAAAGT GGTGATCAGC CAGGTCGCCG ATCTCAACCT GAAACTGGCC
CGCACCGATA TCAAGGCGCC GTTCGGCGGG TTGATCACCG CCCGCAATGC CCGCATCGGC
GCCATTGCTG CCGGCTCCGG CCAGCCGCTG TTCACCATTA TCCGCGACAG CAAGATCGAG
CTGGTGGCCG AAGTATCCGA AAGCGATATG CAAAAAATGC GGATAGGCCA ACCGGCCGAA
ATCGCCATTG CTGGACAGGC AACGCCGATC AGCGGCCATG TGCGGCTGAT CTCACCCGCC
ATCAGCCCAA CGACCAGGCT GGGCGAGGTC CATATTTTGC TCGATGATAG CGATGCGGCC
CGCCAAGGCA TGTATGCCAG CGCCTTGATT ACTATTACAT CCGCCTCAGG CATTGCCCTG
CCCTTGTCCG CAATCGACAG CGGCAAGGCC GGGAGCTTTA CCCGCATCGT AGAGAATGGC
GTGGTCCGCC AAGTGAAAAT CGAGACCGGC ATTATCGAAA ACGGCTTTAT CCTGGTGACA
TCTGGCGTCA AGCCGGGCGA TCTGGTGGTG CTGAAAGCAG GCGCTTTCGT GCGCGATGGC
GACAAGGTCA GGCCGGTGCT TGAAACCGTG AGCCAGACCG GCGCAATATC CAACTGA
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| Protein sequence | MKAQSTEPTA STDAQLPAIV VAKASTQSLT DKVIGTGSVK AVEEIYVQPE VDGIAIRNLL
ADVGDKVKAG QVLATLDGDS LILQKAQYAA NQAKAEASLA QYKIQLIDAQ ASAAEAERQL
ARGQSLVSGG TISTAQVQQY ETSAINARNK VDSARQSIAI AEAELKVVIS QVADLNLKLA
RTDIKAPFGG LITARNARIG AIAAGSGQPL FTIIRDSKIE LVAEVSESDM QKMRIGQPAE
IAIAGQATPI SGHVRLISPA ISPTTRLGEV HILLDDSDAA RQGMYASALI TITSASGIAL
PLSAIDSGKA GSFTRIVENG VVRQVKIETG IIENGFILVT SGVKPGDLVV LKAGAFVRDG
DKVRPVLETV SQTGAISN
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