Gene Avi_3453 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_3453 
Symbol 
ID7387056 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand- 
Start bp2857778 
End bp2858419 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content59% 
IMG OID643652302 
Producttranscriptional regulator TetR family 
Protein accessionYP_002550485 
Protein GI222149528 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAATAG CCAGGGCATC GAAGACGCAG AGGCGGACGC GAATTCAGGA GGAAAAGGAG 
GAGGTCATCC TGCAAGCGGC GCTGGACGTG TTTTCCATGC GCGGCTTTCG CGGCTCGACC 
ATCGACCAGA TCGCCGAGGT GGCGGGCATG TCGAAACCCA ATCTGCTCTA TTATTTCCGC 
ACTAAGGAGG CGATGCACCG GGTGCTGATG GACCGGCTGC TGGCCAATTG GCTTGAGCCG 
CTGCGCGCCT TTGATGCCGA GGGCGATCCG CAGGAGGAAA TCCGGAGCTA TATCCGCCGC 
AAGCTGGAAA TGGCCCGCGA TTTTCCGCGC GAAAGTCGGC TGTTTGCCAA TGAAGTGCTC 
CAGGGGGCGC CCATTATCGA GGATGTGCTG AAAGGACCGC TGAAAGACCT GGTCGATGAA 
AAGGCCGAGG TGATCCGCAG TTGGATCATG GCGGGCAAGC TTATCGCCTG CGATCCCTAT 
CACCTGATTT TTTCAATCTG GTCGACCACC CAGCATTATG CTGATTTCGA CGTGCAGGTG 
CGTGCCGTGC TGGGCGCGGG GACGGCGGAA GACGACCGGT TCGAGAATGC CGCGCGGTTT 
CTGGAAGGGC TGTTTCTGAG GGGTCTACAG CCGGGAATGT GA
 
Protein sequence
MAIARASKTQ RRTRIQEEKE EVILQAALDV FSMRGFRGST IDQIAEVAGM SKPNLLYYFR 
TKEAMHRVLM DRLLANWLEP LRAFDAEGDP QEEIRSYIRR KLEMARDFPR ESRLFANEVL 
QGAPIIEDVL KGPLKDLVDE KAEVIRSWIM AGKLIACDPY HLIFSIWSTT QHYADFDVQV 
RAVLGAGTAE DDRFENAARF LEGLFLRGLQ PGM