Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_3451 |
Symbol | |
ID | 7387054 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 2853956 |
End bp | 2856685 |
Gene Length | 2730 bp |
Protein Length | 909 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 643652300 |
Product | GGDEF family protein |
Protein accession | YP_002550483 |
Protein GI | 222149526 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATCATTT CTGCCTGGGC CGGTAACATT GTGGGAAGTG TCAGGAAGCT TGCCAGCTTC TACTGGCCCG CTTTGATTGT TTGCGCTGCG GTTTTCGTCA CTATTTTTGC AATCGAAAGT CAAAATCGCA AAGCCTATCT GGAAGACAGG AAGGCCGCGA TTTCCGACAA GCTCAGCCCC GTCCGCGCCC GGCTGGAAGG CAATATCAAG GCTGACATCA AGATGCTTCA GGGCCTGCTT GCCGTGCTTG AAACCGAGCC GGACATGAGT CAGGCCCGGT TTTCCGCCAT TGGCCGGCGA TTTTTCTCCA GGCCTGTCCG GTTGCGCTCG ATCAGTCTTT CCTACGACAT GCGGACAAGA CTGACCTATC CGTTCATTCT CAACCAGGCT GGGCATGATT TTACCGCCAA CCCGCAAGAG CAAAAAGCCG CCGTCCAGGC CGAGAACAGC AATATCTATG TCATCACAGA GCCGATGAAC CTGCCGACAA CAGGCAATAG TCTCGTTATC TTTTACCCCA TCGCATCATC GAGCCTCAAC GAACCGGCCA GCACGTCACC AGACTTGCCG GACCAGACGT CCCCTCAGGA TAAGCCCTTC AGCCATGGCC TGCTGCGTGG CACCGTCGAT GTGGAGCGGC TGTTTCGCGA AAGTGGCCTC TACGACCTCG ATCTGAATGT CGCGCTTTAC GCCGGTTCCG ATACGCAGAA CGCAGTCAGC AGGGCGTTTT TCGGCGATCC CGCACTGATC GGCGCCAGCG CGGTGCGCAT GGAGGTCAGT ATCGGCGCAC AGACCTGGAT ATTGGCGGCA GCGCCCAAGG GTGGCTGGCA ACAACCTGCC AACGAAATCT GGTTCCGCCA GCTGGTAATG TTCATCCTGG CGCTGGCAAT CATCACGCCT TTCCTGTGGG TCGCGCATCT GCTGATGGAA CGGCAGGCCA ATATTGCCGA GCTCAACGAG CAGGAACGGG AACTGCGCAC TCTGTCACAA CGATTGCAAA TCGCGCTCGA CGCCTCGCAA ATCGGTGTGT GGGAAATGGA TATCGGCAGC CTCGCCCTGA CCTGGGACAA TCGCATGCGC CAGCTCTACG ATTGTGATCC GTCCCGTCCG ATTGAAATCC GCGAGGATTG GAGCAACTGT CTCCATCCAG AGGATCGGGA AAGCGCCACT CACGCTCTGG CCACGGCCAT CCGCACGGGC TCCAATTACT CGACCGAGTT CCGCATTCTG GATCGCAGCG GCCAGATACG CCATATCCGC TCCTTCGGCT CGATCTATCG CGATGCCGAT TTTCGCAAGA AGATCGTTGG CGTGAACTGG AACATCACCG CGGATGTCAA ACTGCATGAA GCCCTGCACG ATGCCAAAAC CGCGCTCGAG GCCCAGAACC AGGAACTGGA AAACGCCCGG CAGATCATGG AACATACGTC TCTGCACGAT CCCCTCACCG GACTTGCAAA CCGACGCTTC CTCGACCGGC ATCTGGCAGA GATCGAAGAC CTCAGGGGTA ACGGCAAATC TGTCGCTCTG CTGCATATCG ATCTCGACAG GTTCAAGGAG ATCAACGACA CGCTGGGCCA CGCGGCGGGT GATGCCATGC TGCGCCATGC TGCCAGCCAG ATCAACGCCC ACATGTCGCC GGGCGATTTT GCCGCGCGCA TCGGCGGCGA CGAATTCGTG GTGGTCAAGC ACGATGAGAG CAGCCAGGCC GCAGCCCGCA TCCTTGGCGA AACCCTGATC GACGCCATCA ACCAGCCGAT CCATTGGGAG GGCCAGGAAT GCCGTGTTAG CGCCAGCATC GGCATTGCCC AGTCCTGCAA CAACCACCCG CATCTGGAAC AGGCATTGAT CAATGCCGAT ATCGCGCTTT ACGAGGCAAA ACGGCGCGGA AAGAACCGGC TGGAATTCTT TTCCGACACG TTGAAGGAAG CGACCCTTTC CACCAAGCGC ACCGCCGACG CCATTCTGCG CTCGCTGGCC GATCACGATT TCATTCCCTA TTTCCAGCCG CAATTTGACG CGCACACCAT GCAGATTACT GGCGTCGAGG CGCTCGCGCG CTGGCAACAT CCGCAGCTTG GCCTGTTGCC GCCGATTGCA TTCCTGTCGG TGGCCGAAAG CCTGAATGTC GTGGCCGCCA TCGACAACAG CATTTTGGAA CAATCGCTTG CCCAGGCCCG CCGCTGGCAG GAGCATGGGC TGGATACGCC GCATGTCTCG GTCAATATCT CTGCCCAGAG ATTGTTCGAC GACGGCCTTT TTGCCCATCT GCGCGATACG CCGCTTCCTG CTGGCGGCCT TGCTTTCGAG TTGCTGGAAT CGATCTCCTT CGATGACAAG GCGGAAGCCG CGGCCATCGC CATCAGCCAG ATCAAGATCC TCGGTATCGA TATCGAGATC GATGATTTCG GCACCGGCTA TTCCTCGATC CTCAGCCTTT TGAAACTCTC GCCCCGACGC TTGAAAATCG ACCGGCAATT GACCCTGCCG ATCATCGAGA GCAAGCAACA GCGACGGTTG ATCGGCTCTA TCGTCGAAAT CGGTCGGTCG CTTGGCATTG AAATCATTGC CGAAGGTGTC GAAACCATGC AGCATGCCGA CATTCTGCGC GATCTCGGCT GTCATACCTT ACAGGGCTTT GGCCTCGCCC GCCCGATGAA CGGCGATGAC CTGTTCGCGC TTTTGAAGCG CCGGTCCCTG GACCGTAAAC AGGACGCCAT CGCGCTCTGA
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Protein sequence | MIISAWAGNI VGSVRKLASF YWPALIVCAA VFVTIFAIES QNRKAYLEDR KAAISDKLSP VRARLEGNIK ADIKMLQGLL AVLETEPDMS QARFSAIGRR FFSRPVRLRS ISLSYDMRTR LTYPFILNQA GHDFTANPQE QKAAVQAENS NIYVITEPMN LPTTGNSLVI FYPIASSSLN EPASTSPDLP DQTSPQDKPF SHGLLRGTVD VERLFRESGL YDLDLNVALY AGSDTQNAVS RAFFGDPALI GASAVRMEVS IGAQTWILAA APKGGWQQPA NEIWFRQLVM FILALAIITP FLWVAHLLME RQANIAELNE QERELRTLSQ RLQIALDASQ IGVWEMDIGS LALTWDNRMR QLYDCDPSRP IEIREDWSNC LHPEDRESAT HALATAIRTG SNYSTEFRIL DRSGQIRHIR SFGSIYRDAD FRKKIVGVNW NITADVKLHE ALHDAKTALE AQNQELENAR QIMEHTSLHD PLTGLANRRF LDRHLAEIED LRGNGKSVAL LHIDLDRFKE INDTLGHAAG DAMLRHAASQ INAHMSPGDF AARIGGDEFV VVKHDESSQA AARILGETLI DAINQPIHWE GQECRVSASI GIAQSCNNHP HLEQALINAD IALYEAKRRG KNRLEFFSDT LKEATLSTKR TADAILRSLA DHDFIPYFQP QFDAHTMQIT GVEALARWQH PQLGLLPPIA FLSVAESLNV VAAIDNSILE QSLAQARRWQ EHGLDTPHVS VNISAQRLFD DGLFAHLRDT PLPAGGLAFE LLESISFDDK AEAAAIAISQ IKILGIDIEI DDFGTGYSSI LSLLKLSPRR LKIDRQLTLP IIESKQQRRL IGSIVEIGRS LGIEIIAEGV ETMQHADILR DLGCHTLQGF GLARPMNGDD LFALLKRRSL DRKQDAIAL
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