| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3451 |
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| Symbol | |
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| ID | 7387054 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 2853956 |
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| End bp | 2856685 |
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| Gene Length | 2730 bp |
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| Protein Length | 909 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643652300 |
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| Product | GGDEF family protein |
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| Protein accession | YP_002550483 |
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| Protein GI | 222149526 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCATTT CTGCCTGGGC CGGTAACATT GTGGGAAGTG TCAGGAAGCT TGCCAGCTTC
TACTGGCCCG CTTTGATTGT TTGCGCTGCG GTTTTCGTCA CTATTTTTGC AATCGAAAGT
CAAAATCGCA AAGCCTATCT GGAAGACAGG AAGGCCGCGA TTTCCGACAA GCTCAGCCCC
GTCCGCGCCC GGCTGGAAGG CAATATCAAG GCTGACATCA AGATGCTTCA GGGCCTGCTT
GCCGTGCTTG AAACCGAGCC GGACATGAGT CAGGCCCGGT TTTCCGCCAT TGGCCGGCGA
TTTTTCTCCA GGCCTGTCCG GTTGCGCTCG ATCAGTCTTT CCTACGACAT GCGGACAAGA
CTGACCTATC CGTTCATTCT CAACCAGGCT GGGCATGATT TTACCGCCAA CCCGCAAGAG
CAAAAAGCCG CCGTCCAGGC CGAGAACAGC AATATCTATG TCATCACAGA GCCGATGAAC
CTGCCGACAA CAGGCAATAG TCTCGTTATC TTTTACCCCA TCGCATCATC GAGCCTCAAC
GAACCGGCCA GCACGTCACC AGACTTGCCG GACCAGACGT CCCCTCAGGA TAAGCCCTTC
AGCCATGGCC TGCTGCGTGG CACCGTCGAT GTGGAGCGGC TGTTTCGCGA AAGTGGCCTC
TACGACCTCG ATCTGAATGT CGCGCTTTAC GCCGGTTCCG ATACGCAGAA CGCAGTCAGC
AGGGCGTTTT TCGGCGATCC CGCACTGATC GGCGCCAGCG CGGTGCGCAT GGAGGTCAGT
ATCGGCGCAC AGACCTGGAT ATTGGCGGCA GCGCCCAAGG GTGGCTGGCA ACAACCTGCC
AACGAAATCT GGTTCCGCCA GCTGGTAATG TTCATCCTGG CGCTGGCAAT CATCACGCCT
TTCCTGTGGG TCGCGCATCT GCTGATGGAA CGGCAGGCCA ATATTGCCGA GCTCAACGAG
CAGGAACGGG AACTGCGCAC TCTGTCACAA CGATTGCAAA TCGCGCTCGA CGCCTCGCAA
ATCGGTGTGT GGGAAATGGA TATCGGCAGC CTCGCCCTGA CCTGGGACAA TCGCATGCGC
CAGCTCTACG ATTGTGATCC GTCCCGTCCG ATTGAAATCC GCGAGGATTG GAGCAACTGT
CTCCATCCAG AGGATCGGGA AAGCGCCACT CACGCTCTGG CCACGGCCAT CCGCACGGGC
TCCAATTACT CGACCGAGTT CCGCATTCTG GATCGCAGCG GCCAGATACG CCATATCCGC
TCCTTCGGCT CGATCTATCG CGATGCCGAT TTTCGCAAGA AGATCGTTGG CGTGAACTGG
AACATCACCG CGGATGTCAA ACTGCATGAA GCCCTGCACG ATGCCAAAAC CGCGCTCGAG
GCCCAGAACC AGGAACTGGA AAACGCCCGG CAGATCATGG AACATACGTC TCTGCACGAT
CCCCTCACCG GACTTGCAAA CCGACGCTTC CTCGACCGGC ATCTGGCAGA GATCGAAGAC
CTCAGGGGTA ACGGCAAATC TGTCGCTCTG CTGCATATCG ATCTCGACAG GTTCAAGGAG
ATCAACGACA CGCTGGGCCA CGCGGCGGGT GATGCCATGC TGCGCCATGC TGCCAGCCAG
ATCAACGCCC ACATGTCGCC GGGCGATTTT GCCGCGCGCA TCGGCGGCGA CGAATTCGTG
GTGGTCAAGC ACGATGAGAG CAGCCAGGCC GCAGCCCGCA TCCTTGGCGA AACCCTGATC
GACGCCATCA ACCAGCCGAT CCATTGGGAG GGCCAGGAAT GCCGTGTTAG CGCCAGCATC
GGCATTGCCC AGTCCTGCAA CAACCACCCG CATCTGGAAC AGGCATTGAT CAATGCCGAT
ATCGCGCTTT ACGAGGCAAA ACGGCGCGGA AAGAACCGGC TGGAATTCTT TTCCGACACG
TTGAAGGAAG CGACCCTTTC CACCAAGCGC ACCGCCGACG CCATTCTGCG CTCGCTGGCC
GATCACGATT TCATTCCCTA TTTCCAGCCG CAATTTGACG CGCACACCAT GCAGATTACT
GGCGTCGAGG CGCTCGCGCG CTGGCAACAT CCGCAGCTTG GCCTGTTGCC GCCGATTGCA
TTCCTGTCGG TGGCCGAAAG CCTGAATGTC GTGGCCGCCA TCGACAACAG CATTTTGGAA
CAATCGCTTG CCCAGGCCCG CCGCTGGCAG GAGCATGGGC TGGATACGCC GCATGTCTCG
GTCAATATCT CTGCCCAGAG ATTGTTCGAC GACGGCCTTT TTGCCCATCT GCGCGATACG
CCGCTTCCTG CTGGCGGCCT TGCTTTCGAG TTGCTGGAAT CGATCTCCTT CGATGACAAG
GCGGAAGCCG CGGCCATCGC CATCAGCCAG ATCAAGATCC TCGGTATCGA TATCGAGATC
GATGATTTCG GCACCGGCTA TTCCTCGATC CTCAGCCTTT TGAAACTCTC GCCCCGACGC
TTGAAAATCG ACCGGCAATT GACCCTGCCG ATCATCGAGA GCAAGCAACA GCGACGGTTG
ATCGGCTCTA TCGTCGAAAT CGGTCGGTCG CTTGGCATTG AAATCATTGC CGAAGGTGTC
GAAACCATGC AGCATGCCGA CATTCTGCGC GATCTCGGCT GTCATACCTT ACAGGGCTTT
GGCCTCGCCC GCCCGATGAA CGGCGATGAC CTGTTCGCGC TTTTGAAGCG CCGGTCCCTG
GACCGTAAAC AGGACGCCAT CGCGCTCTGA
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| Protein sequence | MIISAWAGNI VGSVRKLASF YWPALIVCAA VFVTIFAIES QNRKAYLEDR KAAISDKLSP
VRARLEGNIK ADIKMLQGLL AVLETEPDMS QARFSAIGRR FFSRPVRLRS ISLSYDMRTR
LTYPFILNQA GHDFTANPQE QKAAVQAENS NIYVITEPMN LPTTGNSLVI FYPIASSSLN
EPASTSPDLP DQTSPQDKPF SHGLLRGTVD VERLFRESGL YDLDLNVALY AGSDTQNAVS
RAFFGDPALI GASAVRMEVS IGAQTWILAA APKGGWQQPA NEIWFRQLVM FILALAIITP
FLWVAHLLME RQANIAELNE QERELRTLSQ RLQIALDASQ IGVWEMDIGS LALTWDNRMR
QLYDCDPSRP IEIREDWSNC LHPEDRESAT HALATAIRTG SNYSTEFRIL DRSGQIRHIR
SFGSIYRDAD FRKKIVGVNW NITADVKLHE ALHDAKTALE AQNQELENAR QIMEHTSLHD
PLTGLANRRF LDRHLAEIED LRGNGKSVAL LHIDLDRFKE INDTLGHAAG DAMLRHAASQ
INAHMSPGDF AARIGGDEFV VVKHDESSQA AARILGETLI DAINQPIHWE GQECRVSASI
GIAQSCNNHP HLEQALINAD IALYEAKRRG KNRLEFFSDT LKEATLSTKR TADAILRSLA
DHDFIPYFQP QFDAHTMQIT GVEALARWQH PQLGLLPPIA FLSVAESLNV VAAIDNSILE
QSLAQARRWQ EHGLDTPHVS VNISAQRLFD DGLFAHLRDT PLPAGGLAFE LLESISFDDK
AEAAAIAISQ IKILGIDIEI DDFGTGYSSI LSLLKLSPRR LKIDRQLTLP IIESKQQRRL
IGSIVEIGRS LGIEIIAEGV ETMQHADILR DLGCHTLQGF GLARPMNGDD LFALLKRRSL
DRKQDAIAL
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