Gene Avi_3423 details

Gene Information

• Locus tag: Avi_3423
• ID: 7387036
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 2834533
• End bp: 2835108
• Gene Length: 576 bp
• Protein Length: 191 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 643652281
• Product: bacteriophage repressor protein C1
• Protein accession: YP_002550465
• Protein GI: 222149508
• COG category: [K] Transcription
• COG ID: [COG2932] Predicted transcriptional regulator

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCATGG ATATCGCGAC CTACATAGCC CAACTGCTCA GCATGAAAAA ATGGAACCAG 
GTGAAGCTGG CAGCCCATTT TGGCGTGTCC CAATCCACCG TCAATCGATG GAAGTCCGGC 
TCCGAGCCGG AAGGCCACCA CCGCGACGCT ATCCGCGAAC TCTACAACAC GGAGTTCGGC 
ACCCCGGACA GCAAACCGTT CAAGCGCGTC AAGCTGATGG GCAAGGTCGG CGCCGGCCAG 
GAAATCTACG CCATCGACGA TGGCGGGCAA AGCGATGTCG ATGCGCCGGC AGATGCCCAT 
CAGAACACCG TTGCCGTTGA GGTGTCAGGG GAATCGATGT ATCCCGCCTA TGAAGAGGGA 
ACCATCCTCT TCTACTCCAA GACCTTGCCG CCCTCGGAGA TGGTCAACAG GCGCGCCGTC 
GTGCAGCTGG CGGATGGTCG AATCTTTGTC AAAACCGTCC GCCCGGGCAC AACCCCGAAC 
ACCTGGACGC TGACCAGCAT CAATGCGCTC TACCCAGATA TGATCGACCA GATCGTCGAG 
TGGGCCGCGC CGATCGACTG GATCAAGCCG CGGTAA 

 

Protein sequence

MTMDIATYIA QLLSMKKWNQ VKLAAHFGVS QSTVNRWKSG SEPEGHHRDA IRELYNTEFG 
TPDSKPFKRV KLMGKVGAGQ EIYAIDDGGQ SDVDAPADAH QNTVAVEVSG ESMYPAYEEG 
TILFYSKTLP PSEMVNRRAV VQLADGRIFV KTVRPGTTPN TWTLTSINAL YPDMIDQIVE 
WAAPIDWIKP R