Gene Avi_3353 details

Gene Information

• Locus tag: Avi_3353
• ID: 7387502
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 2773831
• End bp: 2775711
• Gene Length: 1881 bp
• Protein Length: 626 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 643652230
• Product: GGDEF family protein
• Protein accession: YP_002550414
• Protein GI: 222149457
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain
• TIGRFAM ID: [TIGR00229] PAS domain S-box; [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.374674
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATGTCA TGCATATCGC ATCGAAAAAT CCCGCTCAAC ATCTGGTTAT CGCGGGTGGA 
CTTGCAATAT TTCTGGCATT GACGATCTGG TCCGAGGTTG CAAACTGGAC GGCCCAGGTG 
TCGCGGATGA ATTCTTATCT CGCGCAGACG GCAAGAGCGA TTGCCCAGCA TACGGACGAT 
GTCATCGAAG TGGCCAAGCA ACCTCTGGCT GGTCTGGTCT TCGAAGTGCA GGAAAACAAC 
AGCAAAAGCG TTTTGCAGAG CCTGGACCTG GTTCGCAGGA TGCGTGAGCT TATCAAGACG 
TCACCCTATT TGCGCAGTTT GGCCTATATC GGCCCGGATG GTCGGCTGAT TGAGTCGACC 
TCCGATCCGT TTTCATCGGG TCTCGATCTT TCCAGCCGCA GCTATTTCAA GATCCATCAA 
ACATCCACGG AGTTGCAACC GCTTGTCGAT GGACCCTATC AAAGTCCGTC GGTCAAAGAC 
TGGTTCATTA CCCTGTCCCA GCGGATGAAC GATGATCGGG GGCAATTTGC CGGCATCATG 
GTGGCGACCA TTGATGTCGA AAGCTTCATC CGGTTTTTCC GGAGTTTCAA CATGCTGGAC 
AACGGTGCCT TCGCGATGAT GGATGGCGCC GGGCGGGTTC TGGTGCGTGC GCCCCTGGAT 
GCGACGGCCA TGGGCACCAG CATTGCCGAT TCAGCTTTGT ACCGAAACGC TATTTCAACA 
AGCAACATTG GAAATTTTCA ATATACATCA CGATTTGACG GCATATTGAG AACCTCTGGC 
TATTATAAGA GCAGCAATAC ACAGATCACC GTACTTGTCG CTGTCTCCAA AAAAGCTATT 
CTTTGGTATT GGATAGACAT CAGCAAACCC CGATGGATCT GTTTTATCGT CGCATTGATG 
GTCGCGTGCG CTTTGGGCAT CCGCTTGAGA CGGCAATGGG CATTGAAGCG CCGCGACGAG 
ATGATTATTG CCGCACGGGA AGCGGAGTTT CGCTTGATTG CCAATGCCTC ATCCGACTTG 
ATCGAAAAAC TGGATGACAA CGGTATCCGC GAATATGTTT CAGCAGCCGC CAAATCTGTT 
CTCGGCGTGG AGGCCGATAC GATTGTCGGA CGCAGCGTGT TGGACGAATA CGATGCCGAG 
GCCCGGCAAT ACTGGTCAGA GGCGCTGGCC AACATTGCCG CCGGTTCATC AATCGAACGG 
CTTGTATTCC CGAGGATTAA AAAAACCGGT GAGATCGCCT GGCTGGAAAC CGTGATAACC 
CGGGTTCGCA GCTTCGATAT CAGCAGCGGC ATGGTTGCCG TAACCAGGGA CGTTACAAGT 
CAAAGGCTTT TGCAGGAAGA GCTGGATCGG CTTGCCAACA CGGATGAATT GACGCAGCTT 
TCCAACAAGC GTCACTTCAA CAGGCAGCTG AAAAGTCTTT CCGCCGAAGC ACGGATGGTG 
GGCACTCCGC TGTCACTGCT TGTCGTTGAT GTCGATAAAT TCAAGCTGTT CAACGATACC 
TATGGTCATC TGCCGGGTGA TAATTGCCTG CGGAAAATTT CGACGGAAAT TGCCGCTGCA 
ATCCGTCCCG GAACCGATCT TGCCGCGCGC TACGGTGGAG AGGAAATCGT CATCCTGCTG 
CCGGGAAAAA CCGCAAGCCA GGCACACCAA GTGGGCGAGG AGATCCGCCA ACGGATCGCC 
GCCCTGGAGA TAATCCACCA GAAAAACCTG CCCTGGGGTC ATGTGACCGT CAGCATCGGC 
GTGGCAGAAC AATCACCTGC GCATGATGAA ACAGATGAAG CTCTGTTTGT GAAAGCCGAT 
AAATGCCTCT ACACGGCCAA AAACTCCGGT CGCAATAAAG TCGTCTCTTT CGATGAGAAT 
TTGTCAGCCG CGGCGGCCTG A 

 

Protein sequence

MNVMHIASKN PAQHLVIAGG LAIFLALTIW SEVANWTAQV SRMNSYLAQT ARAIAQHTDD 
VIEVAKQPLA GLVFEVQENN SKSVLQSLDL VRRMRELIKT SPYLRSLAYI GPDGRLIEST 
SDPFSSGLDL SSRSYFKIHQ TSTELQPLVD GPYQSPSVKD WFITLSQRMN DDRGQFAGIM 
VATIDVESFI RFFRSFNMLD NGAFAMMDGA GRVLVRAPLD ATAMGTSIAD SALYRNAIST 
SNIGNFQYTS RFDGILRTSG YYKSSNTQIT VLVAVSKKAI LWYWIDISKP RWICFIVALM 
VACALGIRLR RQWALKRRDE MIIAAREAEF RLIANASSDL IEKLDDNGIR EYVSAAAKSV 
LGVEADTIVG RSVLDEYDAE ARQYWSEALA NIAAGSSIER LVFPRIKKTG EIAWLETVIT 
RVRSFDISSG MVAVTRDVTS QRLLQEELDR LANTDELTQL SNKRHFNRQL KSLSAEARMV 
GTPLSLLVVD VDKFKLFNDT YGHLPGDNCL RKISTEIAAA IRPGTDLAAR YGGEEIVILL 
PGKTASQAHQ VGEEIRQRIA ALEIIHQKNL PWGHVTVSIG VAEQSPAHDE TDEALFVKAD 
KCLYTAKNSG RNKVVSFDEN LSAAAA