Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_3337 |
Symbol | tctD |
ID | 7387490 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 2760869 |
End bp | 2761534 |
Gene Length | 666 bp |
Protein Length | 221 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 643652218 |
Product | two component response regulator |
Protein accession | YP_002550402 |
Protein GI | 222149445 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.986169 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGATTGC TGATCGTTGA AGACAATCAT GAATTGGCCG ATTGGCTGGC GAAGGCGCTG ACGCAAGCGA ATTACACCGT CGATGCCGCC CATGATGGCG AAGAGGCCGA GGATTTTTTG AACCTCGCCG ATTATGCCGC TGTGATTCTC GATCTGTCCC TGCCGAAGAT CGATGGAATG ACCCTGCTGA AGCGCATCCG CCGCAGTGGC CGCAAAGTGC CGGTGATTAT CCTGACCGCC AATGCCTCGC TGGACGGACG GGTGGCGGGG CTGGATTCCG GCGCTGACGA TTATCTCGCC AAGCCCTTCG AAATGGCCGA ACTGGAAGCC CGGCTGCGGG CGCTGATCCG GCGCGGCCAT GATCTGGCCA GCCCGGAAAT TGCCGTGGCT GATCTGGTGC TCAATAGCGC GACACGGCAG TTTTCCCTGA AGGGCGAGGT CTTGTCGCTG ACGCCACGCG AACATTCGGT GCTGGAATAT TTGATACTGA AGGCGGGCAG CACCGTGACC AAGGCGGCGC TGTCGCAAAG CGTGTTCGGC TTTGATGCCG AGACCGATCC GAGCGCCATT GAGATTTACG TGCACCGGGT GCGCAAGAAG CTGGAAGGCG GGGCGGTGCA GATCGCCACC CTGCGCGGCC TCGGCTATAT GCTGCGGGCC GCGTGA
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Protein sequence | MRLLIVEDNH ELADWLAKAL TQANYTVDAA HDGEEAEDFL NLADYAAVIL DLSLPKIDGM TLLKRIRRSG RKVPVIILTA NASLDGRVAG LDSGADDYLA KPFEMAELEA RLRALIRRGH DLASPEIAVA DLVLNSATRQ FSLKGEVLSL TPREHSVLEY LILKAGSTVT KAALSQSVFG FDAETDPSAI EIYVHRVRKK LEGGAVQIAT LRGLGYMLRA A
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