Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_3319 |
Symbol | bdhA |
ID | 7387474 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 2742307 |
End bp | 2743077 |
Gene Length | 771 bp |
Protein Length | 256 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 643652202 |
Product | d-beta-hydroxybutyrate dehydrogenase |
Protein accession | YP_002550386 |
Protein GI | 222149429 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | [TIGR01963] 3-hydroxybutyrate dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0697406 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCAGGA CTGTCGTTAT CACCGGTTCC ACCAGCGGCA TCGGGCTTGG CATCGCCCGC GCCTTTGCGG CTGAAGGCGC CAATGTGCTG ATCAACGGCT TTGGCCCGCT TGGTGAAATC GAATCGATCC GCAAGGAATT GGAAGCGGGC GGCGGCAAGG CGCTCTACCA CCCCGCCGAC ATGACCAAGC CCAAGGAAAT CGCCGAACTG GTGGAAACCG CCATCGCCGA ATTCGGCGGC ATCGATGTTC TCGTCAACAA TGCGGGCATT CAGCATGTCG CTCCCGTCGA GGAATTTCCC ATCGACAAAT GGGACCAGAT CATCGCTATC AACATGTCCA GCGCCTTCCA CACCATGCGC GCCGCCATCC CGGCGATGAA GGCGAAAAAA TATGGGCGGA TCATCAATAT CGCCTCGGCC CATGGCCTGG TCGCCTCGCC GTTCAAATCC GCCTATGTCA CCGCCAAGCA CGGCATTCTC GGCATGACCA AGTCGGTGGC GCTGGAAGTG GCGCAAAGCG GCATTACCGT CAACGCCATC TGCCCCGGCT ATGTGCTGAC GCCGCTGGTG GAAAAGCAGA TTCCCGATAC CGCCAAGGCG CGCGGCATTG CCGAGAGCGA GGTCAAGGAT GTGATGCTGC ATTTGCAGGC CACCAAGGAA TTCGTCACCG TCGAGGACAT TGCCGCCATG ACACTCTATC TTGCCAGCGA TGCGGCAAAG CAGATCACCG GCACCAGCCT ATCCATCGAC GGCGGCTGGA CGGCGCAGTA A
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Protein sequence | MTRTVVITGS TSGIGLGIAR AFAAEGANVL INGFGPLGEI ESIRKELEAG GGKALYHPAD MTKPKEIAEL VETAIAEFGG IDVLVNNAGI QHVAPVEEFP IDKWDQIIAI NMSSAFHTMR AAIPAMKAKK YGRIINIASA HGLVASPFKS AYVTAKHGIL GMTKSVALEV AQSGITVNAI CPGYVLTPLV EKQIPDTAKA RGIAESEVKD VMLHLQATKE FVTVEDIAAM TLYLASDAAK QITGTSLSID GGWTAQ
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