| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3319 |
|---|
| Symbol | bdhA |
|---|
| ID | 7387474 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 2742307 |
|---|
| End bp | 2743077 |
|---|
| Gene Length | 771 bp |
|---|
| Protein Length | 256 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 643652202 |
|---|
| Product | d-beta-hydroxybutyrate dehydrogenase |
|---|
| Protein accession | YP_002550386 |
|---|
| Protein GI | 222149429 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | [TIGR01963] 3-hydroxybutyrate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0697406 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCAGGA CTGTCGTTAT CACCGGTTCC ACCAGCGGCA TCGGGCTTGG CATCGCCCGC
GCCTTTGCGG CTGAAGGCGC CAATGTGCTG ATCAACGGCT TTGGCCCGCT TGGTGAAATC
GAATCGATCC GCAAGGAATT GGAAGCGGGC GGCGGCAAGG CGCTCTACCA CCCCGCCGAC
ATGACCAAGC CCAAGGAAAT CGCCGAACTG GTGGAAACCG CCATCGCCGA ATTCGGCGGC
ATCGATGTTC TCGTCAACAA TGCGGGCATT CAGCATGTCG CTCCCGTCGA GGAATTTCCC
ATCGACAAAT GGGACCAGAT CATCGCTATC AACATGTCCA GCGCCTTCCA CACCATGCGC
GCCGCCATCC CGGCGATGAA GGCGAAAAAA TATGGGCGGA TCATCAATAT CGCCTCGGCC
CATGGCCTGG TCGCCTCGCC GTTCAAATCC GCCTATGTCA CCGCCAAGCA CGGCATTCTC
GGCATGACCA AGTCGGTGGC GCTGGAAGTG GCGCAAAGCG GCATTACCGT CAACGCCATC
TGCCCCGGCT ATGTGCTGAC GCCGCTGGTG GAAAAGCAGA TTCCCGATAC CGCCAAGGCG
CGCGGCATTG CCGAGAGCGA GGTCAAGGAT GTGATGCTGC ATTTGCAGGC CACCAAGGAA
TTCGTCACCG TCGAGGACAT TGCCGCCATG ACACTCTATC TTGCCAGCGA TGCGGCAAAG
CAGATCACCG GCACCAGCCT ATCCATCGAC GGCGGCTGGA CGGCGCAGTA A
|
|---|
| Protein sequence | MTRTVVITGS TSGIGLGIAR AFAAEGANVL INGFGPLGEI ESIRKELEAG GGKALYHPAD
MTKPKEIAEL VETAIAEFGG IDVLVNNAGI QHVAPVEEFP IDKWDQIIAI NMSSAFHTMR
AAIPAMKAKK YGRIINIASA HGLVASPFKS AYVTAKHGIL GMTKSVALEV AQSGITVNAI
CPGYVLTPLV EKQIPDTAKA RGIAESEVKD VMLHLQATKE FVTVEDIAAM TLYLASDAAK
QITGTSLSID GGWTAQ
|
|---|
| |