| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3294 |
|---|
| Symbol | braC |
|---|
| ID | 7387456 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 2722539 |
|---|
| End bp | 2723645 |
|---|
| Gene Length | 1107 bp |
|---|
| Protein Length | 368 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 643652184 |
|---|
| Product | ABC transporter substrate binding protein (branched chain amino acid) |
|---|
| Protein accession | YP_002550368 |
|---|
| Protein GI | 222149411 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0602747 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTTC ATCTTTTGGC GAGCGCTGCC TTTGCCGCCC TTCTCGCCGC TGCCCCCGCA
GCCCATGCCG ATATTACCAT CGGTCTGATG GCGCCGCTGA CCGGACCGTT GGCGGCCATT
GGCGCGCAGA TCAAGAATGG CACGGAAACC GCGATTGCCG ATATCAATGC CAAGGGTGGC
ATCAAGGGCG AAAAGCTGGT GCTGAAGACC GCTGACGATG CGGGCGAGCC GAAGCAAGGC
GTGTCCGCTG CCAACCAGTT GGTTGGCGAA GGCGTGCGTT TCGTGGTCGG CCCGGTGACG
TCAGGCGTCG CCGTTCCGGC CTCCGACGTG CTGGCGGAAA ACGGCGCGCT GATGGTCACC
CCGACCGCCA CGGCCCCAAG CCTGACCAAG CGCGGGTTGC CAACCGTGCT GCGCACCTGC
GGTCGTGACG ACCAGCAGGC CGATGTGGCG GCCAAATATG TGCTGGCCCA TTTCAAGGAC
AAGAAAATCG CCATCCTCAA TGACAAGGGC CAGTATGGCA AGGGTCTGGC GGATGCCTTC
AAAGCCGCGC TCAATGCCGA TGGCGTCAAG GAAGTGTTCA ACGATTCACT GACCGCAGGT
GAAAAGGATT TCAGCGCGCT CGTCACCCGG TTAAAGTCGG CCAATGTCGA AGTACTGTAT
TTTGGCGGCT ATCATCCAGA AGCAGGACTG CTGGTGCGCC AGATGAAGGA TGCCGGGCTG
AAAGCCGTGG TGGTGGCGGG TGATGGCCTC TCCAACAGCG AATATACCAC TGTCGGCGGT
GACGCTGCCA ATGGCACGCT GTTCACCAAT GCCGCCGACG CGCTGAAAAA CCCGGATTCC
AAGGTTGCCG CCGATGTGCT GACCGCCAAA GGTATCCCGG CGGAGGCCTT CACGCTCAAC
GCCTATGCCG CCGTGCAGGT CATTGCCGCT GGTATCGAAA AGGTCGGTAG CGCCGAAGAT
GCCGAAGCCG TCGCCACCGC GATCAAATCC GGCGACGCAA TCCCCACCGC CATTGGCAAG
CTGACCTATG GCGAAACCGG CGACCTCACC TCGCAGAGCT TCTCCATGTA CAAATGGGAA
GGTGGCAAGA CCGTCGCGGC TGAGTAA
|
|---|
| Protein sequence | MKLHLLASAA FAALLAAAPA AHADITIGLM APLTGPLAAI GAQIKNGTET AIADINAKGG
IKGEKLVLKT ADDAGEPKQG VSAANQLVGE GVRFVVGPVT SGVAVPASDV LAENGALMVT
PTATAPSLTK RGLPTVLRTC GRDDQQADVA AKYVLAHFKD KKIAILNDKG QYGKGLADAF
KAALNADGVK EVFNDSLTAG EKDFSALVTR LKSANVEVLY FGGYHPEAGL LVRQMKDAGL
KAVVVAGDGL SNSEYTTVGG DAANGTLFTN AADALKNPDS KVAADVLTAK GIPAEAFTLN
AYAAVQVIAA GIEKVGSAED AEAVATAIKS GDAIPTAIGK LTYGETGDLT SQSFSMYKWE
GGKTVAAE
|
|---|
| |