Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_3273 |
Symbol | avxR |
ID | 7387443 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 2709484 |
End bp | 2710209 |
Gene Length | 726 bp |
Protein Length | 241 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 643652173 |
Product | transcriptional regulator LuxR family |
Protein accession | YP_002550357 |
Protein GI | 222149400 |
COG category | [K] Transcription |
COG ID | [COG2771] DNA-binding HTH domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTGATCG CCGAGCGCCA GACACTGCTC AGTACAGAAA TAACCGCAAT GGAAAGCCGT GAGCATTGTG CGGAGATCCT GCGCACTGTT GCCCAGGCGT TTGGCCTGTC GCATGGCAGT ATCCTGCTCG CACCGTGTGC GACCGATGTG CATCTCCTGC CACTGGTCAT GGAAACCACC TTGCCGATGG AATTCGGCCA TGAATTCGAC CGCCACCAAT TTGTCAAATT CTGTCCGGTG GTCAAGAAAT TCGCCGGCTC GATCCTGCCG CGAACCTGGG ACATGAAATT CAGGGAACCC AATGACATGG CGGAGGAATG GCCGCCTGCC ATGCGCGACC TGATGATGCG GTTCAAGCTG ATCGTCGGCG TTGTCTTCAT TTTCCCCTCC CTTGATTCCC GGCTGTATTT CATGCGGTTC GATGGGGATC GCTCACCTCT CTCCCAATGC GAGGTCAATG AACTGGGCAT GCTGGCAATG GCGGTTTTCG ACACCTATGA CCGCCTCCGC CGCACCGAGT TGATGAATGT CGATGTTCTC TCCGTGCGCG AACTGGAAGT GCTTCGCTGG ACGGCGCAGG GCAAAACCTC GGTAGAAATT GGCCAGATCC TCAGCCTCTC CGACCACACC ATAAACGCGT ATATGACAAC AGCTATGAAA AAGCTGGATT GCGTCAACCG GACGCAATTG GTAGCAAAGG CCATTAGGCT GAAGCTCATT CAATAA
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Protein sequence | MLIAERQTLL STEITAMESR EHCAEILRTV AQAFGLSHGS ILLAPCATDV HLLPLVMETT LPMEFGHEFD RHQFVKFCPV VKKFAGSILP RTWDMKFREP NDMAEEWPPA MRDLMMRFKL IVGVVFIFPS LDSRLYFMRF DGDRSPLSQC EVNELGMLAM AVFDTYDRLR RTELMNVDVL SVRELEVLRW TAQGKTSVEI GQILSLSDHT INAYMTTAMK KLDCVNRTQL VAKAIRLKLI Q
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