| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3251 |
|---|
| Symbol | |
|---|
| ID | 7388170 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 2688003 |
|---|
| End bp | 2689124 |
|---|
| Gene Length | 1122 bp |
|---|
| Protein Length | 373 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 643652155 |
|---|
| Product | dehydrogenase |
|---|
| Protein accession | YP_002550339 |
|---|
| Protein GI | 222149382 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1748] Saccharopine dehydrogenase and related proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.976387 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAACA TTTCCATCAT TGGCGCGGGA AAGATCGGCG GGGCAATTGC CCATCTTTTG
GCGGAGACCG GCGATTACCG GGTGACGGTT GCCGACCGTA GCGCCGAACA ATTGGGCAAA
CTGGCCCTCC ACCCCGGCAT CGCAACGGCT TTGGTTGATA TTACTGACAG CAAAGCCCTT
GATGCCCATC TTCACGGTCA GTTCGCCGTT CTTTCCGCCG CCCCTTTTCA CCTGACCGGC
GCCATTGCCG AAAGTGCGGG GCGCAGCGGC TGCCATTACC TCGACCTGAC GGAAGACGTA
GCGACCACGA AAAAGGTGGA GGTACTGGCG GAGGGTGCGC GCACCGCCTT TATCCCCCAA
TGCGGCCTTG CCCCCGGCTT CATTTCCATC GTCGCCCATG ATCTGGCGCA GCGCTTCGAG
ACGTTGGACA GCGTGCGAAT GCGGGTCGGC GCGCTGCCGC AATACCCGTC CAATGCGCTG
AACTACAACC TGACCTGGAG CACCGACGGG CTGATCAACG AATATATCGA GCCCTGCGAA
GCCATTGTCG AGGGCCGGAT GATCAGCGTG CCTGCGATGG AAGAACGCGA GGAGTTTTCA
CTGGATGGTG TGACCTATGA AGCCTTCAAC ACGTCAGGCG GCCTCGGCAC GCTGGCGAAA
ACCCTGGAAG GCCGGGTGCG GACCATGAAT TACCGTACCA TCCGCTATCC TGGCCACCAA
GCGATCATCA AGGCGCTGCT CAACGACTTT AACCTGAAGA ACCGCCGCGA CGTGCTGAAG
GACCTGTTTG AAAACGCCCT GCCCGCCACC ATGCAGGATG TGGTGGTGAT TTTCGTGACC
GTCTGCGGCT GGCGCGAAGG CCGCTATATG CAGGAAACCT ATGCCAACAA GGTCTATGCC
GGGACCGTAG CGGGCAAGAA AATGAGCGCC ATCCAGATCA CCACCGCCGC CGGTATCTGC
GCCGTGCTGG ACCTGTTGGC GGAAGTCGCG CTGCCGCAAT CCGGCTTCGT GCGCCAGGAA
GAAATCAGCC TCGACGCCTT TCTCACCAAC CGCTTCGGCC AGCTCTATCA ATCGGCAGCC
GCCCCGATAG CCCGAAAGCG CCACGAATAC GCAGCGGCAT AA
|
|---|
| Protein sequence | MKNISIIGAG KIGGAIAHLL AETGDYRVTV ADRSAEQLGK LALHPGIATA LVDITDSKAL
DAHLHGQFAV LSAAPFHLTG AIAESAGRSG CHYLDLTEDV ATTKKVEVLA EGARTAFIPQ
CGLAPGFISI VAHDLAQRFE TLDSVRMRVG ALPQYPSNAL NYNLTWSTDG LINEYIEPCE
AIVEGRMISV PAMEEREEFS LDGVTYEAFN TSGGLGTLAK TLEGRVRTMN YRTIRYPGHQ
AIIKALLNDF NLKNRRDVLK DLFENALPAT MQDVVVIFVT VCGWREGRYM QETYANKVYA
GTVAGKKMSA IQITTAAGIC AVLDLLAEVA LPQSGFVRQE EISLDAFLTN RFGQLYQSAA
APIARKRHEY AAA
|
|---|
| |