Gene Avi_3244 details

Gene Information

• Locus tag: Avi_3244
• Symbol: clpP
• ID: 7388166
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 2682260
• End bp: 2682841
• Gene Length: 582 bp
• Protein Length: 193 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 643652150
• Product: ATP-dependent Clp protease proteolytic subunit
• Protein accession: YP_002550334
• Protein GI: 222149377
• COG category: [O] Posttranslational modification, protein turnover, chaperones; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0740] Protease subunit of ATP-dependent Clp proteases
• TIGRFAM ID: [TIGR00493] ATP-dependent Clp protease, proteolytic subunit ClpP

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACGAAG AAGACGACGA CAAGAGCAAG GAACTGCCGC TCGGCAAGGA AACGGAAGCG 
AATCTTTTCA AGTCGCGATC GATCTTCATC TATGGCGGGA TCACCCAGGA ACTGGCGCAG 
AAGGTCTGCA CACAGCTGGT GGCTCTGGCT GCCGCCAGCG ACGACGACAT CCGCGTCTAC 
GTCAATTCTC CAGGCGGCCA TGTCGAATCG GGCGATTCGA TCCATGACAT GATCAAGTTC 
ATCAAGCCGA AGGTCTGGAT CATCGGCACC GGCTGGGTCG CCTCCGCTGG CGCGCTGATC 
TATGTTTCGG TTCCGAAGGA GCAGCGTCTT TGCCTGCCCA ATACCCGCTT CCTGCTGCAC 
CAACCCTCGG GCGGCACACG CGGTATGGCC TCGGATATCG AAATCCAGGC CCGCGAAATC 
ATCAAGATGA ACCAGCGCCT GATCAAGATC TTCTCCAAGG CCACCGGCCA GACAGAAGAA 
AAGATCGCCA AGGACATCGA CCGCGATTAC TGGCTCTCGG CTGAAGAAGC CAAGACCTAC 
GGCCTGGTGT CGAAGATCGT CGAAAGCCAG TCGGAAATCT GA 

 

Protein sequence

MNEEDDDKSK ELPLGKETEA NLFKSRSIFI YGGITQELAQ KVCTQLVALA AASDDDIRVY 
VNSPGGHVES GDSIHDMIKF IKPKVWIIGT GWVASAGALI YVSVPKEQRL CLPNTRFLLH 
QPSGGTRGMA SDIEIQAREI IKMNQRLIKI FSKATGQTEE KIAKDIDRDY WLSAEEAKTY 
GLVSKIVESQ SEI