Gene Avi_3208 details

Gene Information

• Locus tag: Avi_3208
• ID: 7388142
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: -
• Start bp: 2656145
• End bp: 2658022
• Gene Length: 1878 bp
• Protein Length: 625 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 643652126
• Product: ABC transporter nucleotide binding/ATPase protein
• Protein accession: YP_002550310
• Protein GI: 222149353
• COG category: [V] Defense mechanisms
• COG ID: [COG1132] ABC-type multidrug transport system, ATPase and permease components

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.333533
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTGATTG CCGCCATCAT CCGTCTGTTC GAACGCTGGG TTGATCCCTT TACCGAGCGT 
GCGGATCTTT GCCCGCCGGG CGACACCACG GCTTTCGTGT GGTTTTATGT GCGCCAGGCC 
AAGTGGGCAT TTTTTGCCAT GGCGCTGTTT GGCGGCGCGG TGGCAGTGAT GGAAGCCAGC 
ATGTTCTGGT TTGTCGGGCG GCTGGTGGAT CTGATCGATA CCGTCCCCAA GGCTGCGGGC 
TGGCAAGGGC TATTTGGTGC GCATGGGCTG GAACTGCTGG GCATTGCCGC CGTTGTCGTC 
TTCGTGCGAT TTGCGGTGAT CACGCTGAGC GCGTTGGTCG AAGAACAGGT CGTGGTGCTG 
AATTTCCTCA ATCTGGTGCG CTGGCAAAGC CATGTCCATG TCGCGCGCCA ATCGCTGAGC 
TTTTTCCATA ATGATTTTGC TGGACGGATT GCCACCAAGG TCTGGGCGGG CGGCCAGGCG 
ACGGGTGATC TCCTGACCTC GTTGCTGCAA GTCGCCTGGT TCATGGTGAT CTACACGATT 
TCCACCATGG CGCTTTTGGC GCAACTGGAC TGGGTGCTGG CAGCGATTAT CGGGATCTGG 
GTGCTGATCT TTGCGGTGCT GGCCCGCTAT TTCGTGCCGC GCATCCGTCG CCATGCCCGC 
GACACCGCCG AAGCAGGCTC GGCGCTGACC GGCAGACTGG TGGATAGCTA TGCCAATATC 
CAGACCCTGA AACTGTTTGC CCGCGAGCGG CAGAACGATC ATTACATCCG GGCCGGTTTC 
GAGCGGTTCC AGGCAGCGCA AGCGCCCTTT ACCCGGTTGA TCACAGGCGT GCGTGCCTCG 
CTGGCACTGC TGTCGGGCGG CATGATCCTG ATGATTGCTG CCGTCTGCAT CGACCGCTGG 
TTTTCAGGCG CGATGACGGC GGGCGGCATG GCGTTTACGC TTGGCCTCGT GCTGCGCCTC 
AGCATGCTGC TAAACCGGAT GATGACCCAG TTGAACGGTA TGATGCGCAA TATCGGCACG 
ATCCAGAACG CCGCCGAGAT GATTTCCCAG CCTATCGGTC TGAAGGACCG GCCCGATGCC 
AAGGTACTCA CTGTCACCGG TCCGGAAATC CGCTTCGACG ATGTGTCCTT CCATTACGGC 
AAGCAGAAGG GTGCCATTGA TCATCTGTCG CTGACCATTA AGCCCGGCGA GAAGGTCGGC 
ATTGTCGGGC GCTCCGGGGC TGGCAAGACG ACGCTGGTCA ACCTTCTGCT GCGGTTCTAC 
GATGTCGAGG GCGGCGCGAT CCGCATCGAT GGCCAGGATT TGCGCGAAGT GACGCAGGAA 
AGCCTGCGGG GCAAGATCGG CATGGTGACG CAGGATACAG CCCTGCTGCA CCGCTCGATC 
CGTGACAACA TCCTGTTTGG CCGCGATGAG GCGAGCGAAG AGCAGCTGCG CGCTGCCGCC 
GACCAGGCCG AGGCGCTGGG CTTTATTGAA AAACTCGTCG ATCAGCGTGG CCGGACCGGC 
TTCGACGTGC ATGTCGGCGA ACGCGGCGTA AAACTCTCCG GCGGCCAGCG CCAGCGGATC 
GCCATTGCCC GGGTGATGCT GAAAGACGCG CCAATCCTGG TGCTGGACGA GGCAACCTCG 
GCGCTCGATT CGGAAGTGGA AGCCGCCATC CAGTCCAATC TGGAACAGCT GATGAGCGGC 
AAAACCGTGC TGGCCATCGC CCACCGCCTC TCCACCATCG CCAGCCTCGA CCGCCTGGTG 
GTGATCGACC AGGGCCGGAT CATCGAAGAG GGCAGCCACG ACGAACTGGT GGAGCGGGGC 
GGGCTCTACG CCGAGCTTTG GGCGCGTCAA TCGGGGGGAT TTCTTGGCGG TGAGGAGGCG 
GATCGGGCGG CGGAATAA 

 

Protein sequence

MLIAAIIRLF ERWVDPFTER ADLCPPGDTT AFVWFYVRQA KWAFFAMALF GGAVAVMEAS 
MFWFVGRLVD LIDTVPKAAG WQGLFGAHGL ELLGIAAVVV FVRFAVITLS ALVEEQVVVL 
NFLNLVRWQS HVHVARQSLS FFHNDFAGRI ATKVWAGGQA TGDLLTSLLQ VAWFMVIYTI 
STMALLAQLD WVLAAIIGIW VLIFAVLARY FVPRIRRHAR DTAEAGSALT GRLVDSYANI 
QTLKLFARER QNDHYIRAGF ERFQAAQAPF TRLITGVRAS LALLSGGMIL MIAAVCIDRW 
FSGAMTAGGM AFTLGLVLRL SMLLNRMMTQ LNGMMRNIGT IQNAAEMISQ PIGLKDRPDA 
KVLTVTGPEI RFDDVSFHYG KQKGAIDHLS LTIKPGEKVG IVGRSGAGKT TLVNLLLRFY 
DVEGGAIRID GQDLREVTQE SLRGKIGMVT QDTALLHRSI RDNILFGRDE ASEEQLRAAA 
DQAEALGFIE KLVDQRGRTG FDVHVGERGV KLSGGQRQRI AIARVMLKDA PILVLDEATS 
ALDSEVEAAI QSNLEQLMSG KTVLAIAHRL STIASLDRLV VIDQGRIIEE GSHDELVERG 
GLYAELWARQ SGGFLGGEEA DRAAE