| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3205 |
|---|
| Symbol | petA |
|---|
| ID | 7388140 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 2653495 |
|---|
| End bp | 2654148 |
|---|
| Gene Length | 654 bp |
|---|
| Protein Length | 217 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 643652124 |
|---|
| Product | ubiquinol-cytochrome c reductase iron-sulfur subunit |
|---|
| Protein accession | YP_002550308 |
|---|
| Protein GI | 222149351 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0723] Rieske Fe-S protein |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence
[TIGR01416] ubiquinol-cytochrome c reductase, iron-sulfur subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.868237 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACCCATG GCGCTCCAAC GGTTTGTCGC AGGCGATGCG AAGAGGATGG TTTGACCGTG
AGCGAACACA ATACACAGAC TGAAACTGCG AGCGGAGGCA TGGGCGCGGG CGAGCCGACG
CGCCGCGACT TCCTTTATCT CGCCACCGGC ATGGCGGGCG CAGTTGGCGC TGCGGCTGTG
GCCTGGCCCT TTATCGACCA GATGCGGCCC GATGCCTCGA CCCTGGCTTT GGCCTCCATC
GAGGTGGATG TCTCGGCGCT TCAGCCGGGC ATGTCGCTGA CGGTCAAGTG GCGCGGCAAG
CCGGTCTTCA TCCGCAACCG CACCGACAAG GAAGTGGAAG AAGCCAAGGG CGTGCCGATT
GCCCAGCTGA AGGACCCGGT GGCGCGCAAC GCCAATGCCG GCGACGACGC CCAGGCGACG
GATCTTGCCC GCTCGGCGGG GCAGGGCAAG GAAAACTGGA TCGTGATGAT CGGCTCCTGC
ACCCATCTCG GCTGCGTGCC GCTCGGTCAG GCCGGGGAAT ATGGCGGGTG GTTCTGTCCC
TGCCATGGCT CGGTCTACGA TACGGCCGGC CGTATCCGCA AAGGTCCGGC GCCGGAAAAC
CTGCATATTC CAAATTATGG GTTCGTATCC AATACCGTGA TCAAGATCGG CTGA
|
|---|
| Protein sequence | MTHGAPTVCR RRCEEDGLTV SEHNTQTETA SGGMGAGEPT RRDFLYLATG MAGAVGAAAV
AWPFIDQMRP DASTLALASI EVDVSALQPG MSLTVKWRGK PVFIRNRTDK EVEEAKGVPI
AQLKDPVARN ANAGDDAQAT DLARSAGQGK ENWIVMIGSC THLGCVPLGQ AGEYGGWFCP
CHGSVYDTAG RIRKGPAPEN LHIPNYGFVS NTVIKIG
|
|---|
| |