| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3188 |
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| Symbol | |
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| ID | 7388126 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 2642170 |
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| End bp | 2642856 |
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| Gene Length | 687 bp |
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| Protein Length | 228 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 643652110 |
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| Product | ABC transporter substrate binding protein (amino acid) |
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| Protein accession | YP_002550294 |
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| Protein GI | 222149337 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.484393 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCCGCCG CAGCCATGGC GCAAAACAGC ATTGTCTTTA CCACGGAAGA TTACCCACCT
TACAATTTCA GGGAAAACGG GGTGGACAAG GGCGTCGGCT ACGAACAGGT CGAAATGATC
ATGAAGGGTC TGTCGATCCC TTATACCATC GAGATGATGC CCTGGGCCCG CGCCATCGCG
ATGGCCGAAA CCGAACCGAT GACCTGCGTG TTTACCGCAG CCCATATCCC TGAGCGCGAA
GGCCGCTTCA AATGGGTCGA GCCGCTGGCC ATCGATCGCA ATATCATCAT GAGCCGCAAG
GGCTCCGGCA TTCAGGTGCA CAATGTCGAA GAAGCCCGCA AATATATTGT CGGCACCCAG
CGCGACGACT ACACTCAGGC TCTTCTGGAA CGGCATGATT TTCCCAGGAT CGACCTCGCC
GCCAACCTCG ATCTGACCAT CAAGAAGCTG GAAAGCGGCC GGATCGACCT CATGCCGGTC
TCGGAAAAAT TCTATCACAA GCTGGTGGAC GAAGGGCATC CGCTGGAACA GCAATTCGTG
CTGACCGAGC AGAAATTCGC CATTGCCTGC AATAAATCCA TGCCCGATGC CCTGATAGCG
CGCATGCAGG ACGGGCTCGA TCGTCTGATT GCCGACGGCA CGCAAGCCAG GCTTTCGCGA
GAATATGGCC TGTTGCAGCC TCAATAG
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| Protein sequence | MAAAAMAQNS IVFTTEDYPP YNFRENGVDK GVGYEQVEMI MKGLSIPYTI EMMPWARAIA
MAETEPMTCV FTAAHIPERE GRFKWVEPLA IDRNIIMSRK GSGIQVHNVE EARKYIVGTQ
RDDYTQALLE RHDFPRIDLA ANLDLTIKKL ESGRIDLMPV SEKFYHKLVD EGHPLEQQFV
LTEQKFAIAC NKSMPDALIA RMQDGLDRLI ADGTQARLSR EYGLLQPQ
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