| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3187 |
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| Symbol | |
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| ID | 7388125 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 2639645 |
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| End bp | 2642047 |
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| Gene Length | 2403 bp |
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| Protein Length | 800 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643652109 |
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| Product | GGDEF family protein |
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| Protein accession | YP_002550293 |
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| Protein GI | 222149336 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCGGT CCGTGGAACA GCGTTTCCTT GCGCTGGTGG CTGGAACAGT GTTCGTCTGT
GTGGTCCCGC TGTTTCTGCT GTTTCTCTGG CTGTCGTCAC AACGGGCCGA AACCGATCAG
CAAAATAGTA TAGCTGTCCT GTTGGCTGCC AATGCCCAGG CACTCGCCAA GCCACTTTGG
GATTTCGATG CTGAGAGTGT ACGCCAGATC AGTGCAGCGC TGGTCTCCGG TGGCGAGGTC
ATCAGGGTCG AAGTTTCCGA CCCGACCGGC AATATCCGCA TTGACATGCC GCAAACATTT
GTCCCGGCAA AGACATTTTC CTCCCTATCG CAAACCATCA TCTACCAGCA TCAGGACGGA
CCGAAAACCG TTGGCACCAT TACGCTTTCC TTTCAAAAGC ATGGCCTGTT TGCCAGCATT
CGCCGGACCG AAGGCGTGTT TATCGCCATC TTCATCCTGT CCATGCTGGT GGTGATTCTG
GCCGCCATCG TCGGCAACCG GATGATGGTC ATGAGACCGC TGACGCAGCT GACCGCCGCC
ATCGAAGCCA CGCGACGTCT GGGTTCGCGA CGTTCGGTCG ACTGGCATTC AAACGATGAA
ATGGGTCGGC TGGCGCAAAG CTTCAACGCC ATGCAATCAA AGCTTCAGCA GGAAGAAATC
GAGCTAAAAC AGGCACACCG GCTGGCAACC GACATCTACC ATGCGACGCC CGCCATGCTG
TTTTCTGTCG ATGCCGATGA CCGCATTACC GGCATCAGCG ACTACTGGAC ATCGGTGACA
GGCTATCACC GCGAAGATAT CATCGGTCTC AGTTTTGAAA GCCTGATCAC AATTGAGGCC
CGTCAGGCCT ACCGCCAAGT CAAACAGAAT GGTGAGGCTG GCCTGCAACA GCAATATACC
ACCAAATTCG TCTGTGCCGA TGGACGGATC ATGGATGTCC TGGTCGTCGA ATCCGGCAAT
GCCACACCGA TGGCGCAGTC CAACCTTTCG CTGAGCGTCA TGACTGACAT CACCGCCCTC
AAACAATCGG AGGCACGCAA CCGGCGCCAG GCAATGACCG ATCATCTGAC CGGGCTTCTC
AACCGTCAGG GTTTCGAGAA CGAACTGGAT GTGCAGATCG AGGCAACCGA CCGCCAGGGC
GGTTCCCTTG CCTGCCTGTT CGTCGATCTC GACCGGTTCA AATGGATCAA TGACAATCTC
GGCCATCATG CCGGCGACAC GACCCTGAAA ATTCTGGTGG ACATGATCGT CCACCTCCTG
CCGGAAAACT CGGTGGCCGC CCGCATCGGC GGAGACGAAT TCGCCATCCT GCTGCGTGCC
AACGATTGCG AAACAGCCGC CCGCGCCGTG GCCAACGATA TCTGCGGGAT TTTCGAAACT
CCCTTCATCG TCAAGGGGAC CGCCACAAGG CTGAGCGCCA GCATCGGCAT CGCGCTGTAT
CCGCAACACG CCGAGACAGC CACGGAACTG CTGCAAAAAG CCGACATGGC CATGTATAAT
CGCAAGCGCG ACGGAAAGAA CGGTTTCCAG ATCTTCGACG ATAGCATTGG CAATACCACC
CGCCGGCGCG CCGAGATCGA GCAAATGATC GAGCAGGCAT TGAGCAACGA CTGGCTCGAT
GCGTTTTTGC AACCAATCAT CGACCTGCAA AGCGGCAAGA CGGTCGGCTA CGAGGCCTTG
ATGCGCCTGC GCCACCCCGT CCACGGCATC ATGGCGCCGA CCGAAATCAT CAGTCTGGCC
GAGGAAACCG GTACCATTCA CGATATCGGC AAGCAGGTTT TCGATAAGGC TCTCGATCAC
TTCACCCGGC TTTCCGCCCT CAGTGGCGAC ACCACCTCCT ATCTGGCGCT GAATGTCTCG
CCAACGCAGA TCGATGCCAG CCTGCTGGTC TGGCTGGCCA GCGCGGTGCA TCTTTTCAAC
ATCGACCCAT CGCGGATCAT CATCGAGATC ACCGAAGCGA CGTTGCTGCA CGACAGCCCA
CATATCCAGA CCGTCCTCCA AAAAATCGGC GATTTTGGCT GCCGCATTGC GCTGGACGAT
TTCGGCACCG GATATTCCTC GCTCAGCTAT CTCAGCCGCT TCCCGGTCAA TATCATCAAG
ATCGACCAGT CCTTCATCCG CTCCATGACC GGCGATACCC TGGATCTGCG CGAGCGCAGC
CGCATGTTGA TCGAAGGCAT TGCCGCTATT TCGCACAAGA TGAAATGCAC CGTGGTGGCC
GAGGGCATCG AGACCAAGGA ACAATGGCGG GCGCTACAGG CAATCGGTGT GGATTACGGC
CAGGGCTATC TGTTCGACCG GCCATTGTCC TTCGAAGATC TGCAAGCCCG GTTCGGAGAC
AATAGCGCGA CACCGCCGAA ATCCACGCCC ATTGCCAGGA TTGGACATCG GACAACGGCT
TAG
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| Protein sequence | MTRSVEQRFL ALVAGTVFVC VVPLFLLFLW LSSQRAETDQ QNSIAVLLAA NAQALAKPLW
DFDAESVRQI SAALVSGGEV IRVEVSDPTG NIRIDMPQTF VPAKTFSSLS QTIIYQHQDG
PKTVGTITLS FQKHGLFASI RRTEGVFIAI FILSMLVVIL AAIVGNRMMV MRPLTQLTAA
IEATRRLGSR RSVDWHSNDE MGRLAQSFNA MQSKLQQEEI ELKQAHRLAT DIYHATPAML
FSVDADDRIT GISDYWTSVT GYHREDIIGL SFESLITIEA RQAYRQVKQN GEAGLQQQYT
TKFVCADGRI MDVLVVESGN ATPMAQSNLS LSVMTDITAL KQSEARNRRQ AMTDHLTGLL
NRQGFENELD VQIEATDRQG GSLACLFVDL DRFKWINDNL GHHAGDTTLK ILVDMIVHLL
PENSVAARIG GDEFAILLRA NDCETAARAV ANDICGIFET PFIVKGTATR LSASIGIALY
PQHAETATEL LQKADMAMYN RKRDGKNGFQ IFDDSIGNTT RRRAEIEQMI EQALSNDWLD
AFLQPIIDLQ SGKTVGYEAL MRLRHPVHGI MAPTEIISLA EETGTIHDIG KQVFDKALDH
FTRLSALSGD TTSYLALNVS PTQIDASLLV WLASAVHLFN IDPSRIIIEI TEATLLHDSP
HIQTVLQKIG DFGCRIALDD FGTGYSSLSY LSRFPVNIIK IDQSFIRSMT GDTLDLRERS
RMLIEGIAAI SHKMKCTVVA EGIETKEQWR ALQAIGVDYG QGYLFDRPLS FEDLQARFGD
NSATPPKSTP IARIGHRTTA
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