Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_3185 |
Symbol | rplY |
ID | 7388124 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 2638648 |
End bp | 2639250 |
Gene Length | 603 bp |
Protein Length | 200 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 643652108 |
Product | 50S ribosomal protein L25/general stress protein Ctc |
Protein accession | YP_002550292 |
Protein GI | 222149335 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1825] Ribosomal protein L25 (general stress protein Ctc) |
TIGRFAM ID | [TIGR00731] ribosomal protein L25, Ctc-form |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.161368 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCCACG CATCTTACGA GCTCAAGGCC GAAACGCGCG AACGGGTTGG TAAGGGGTCC TCCCGTGAAC TTCGCCGCAA CGGTCTCATT CCCGCTGTCA TCTATGGTGA CAAGCAGGCT CCTATTGCCA TCACCCTGAA CACCAATGAA GTCACCAAGC GTATTCATGC TGGCGGTTTC ATGACCACGG TGGCGACCAT TGAAGTCAAC GGCGAAAAGA TCCGCGTCCT GCCCAAGGAC TACCAGCTGG ATCCAGTCCG CGACTTCACC ATGCATATCG ACTTCCTGCG CGTTTCGGCA AACAGCCAGG TCACGGTTGC CGTGCCTGTC CGTTTCGTCA ATGAAGACAA GTCCGCCGTC AAGACCGGCG CTGTCCTCAA CATCGTGCGC CACGACGTCG AGTTGCAGGT TCCGGCCAAC AACATTCCAG AAGCCATCAC CTTCGATCTG GAAGGTCTGA AGATCGGCGA CAGCGTGCAT ATCTCTGCCG TGAAGCTGCC TTCTGGTGTG ACCCCTGTGA TCACCGACCG CGACTTCACG ATTGCAACTC TCGTCGCTCC AGACGTTGAC GTTGCCGACG AAGAAGAAGC AACCGAAGAA TAA
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Protein sequence | MSHASYELKA ETRERVGKGS SRELRRNGLI PAVIYGDKQA PIAITLNTNE VTKRIHAGGF MTTVATIEVN GEKIRVLPKD YQLDPVRDFT MHIDFLRVSA NSQVTVAVPV RFVNEDKSAV KTGAVLNIVR HDVELQVPAN NIPEAITFDL EGLKIGDSVH ISAVKLPSGV TPVITDRDFT IATLVAPDVD VADEEEATEE
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