Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_3128 |
Symbol | lpcC |
ID | 7388666 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 2599653 |
End bp | 2600756 |
Gene Length | 1104 bp |
Protein Length | 367 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 643652070 |
Product | lipopolysaccharide core biosynthesis mannosyltransferase |
Protein accession | YP_002550254 |
Protein GI | 222149297 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0438] Glycosyltransferase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.360612 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATGGCGA AAGGTACCCT GTGCGTGCTT GATCCTGCTT CAATCCTTGT GGTGGCTCCT CATTTCAAGC GGCGACTCTC GGGCGTAACC TCCACCGTGG TGCAATTGAT CCCGCAGCAG CGCCGCCGTG GGCTGGCCAT TGCCACACTT GGTCCCGGCC TGCCGGAGAC CATGCCCGCC CTCACCTTCG CACAAATGCC AGCCTTGTGG AAAAAGCCGC GCGGCGCTTC CCATCGCGTC TGGCATGCCC GGCGCAATCT GGAAATGTTG GTAGGCGTGG TGTTGCGCGA TGTGTTGCGC ATGCCGCTGA AACTGCTGTT TACCTCGGCG GCCCAGCGTC ATCACAGCCG CTATACCCGT TGGCTGATCT CGAAAATGGA TGCCGTGGTC GCCACCAGCG CCCGCTCCGG CTCATTTTTG CATGTACCGC ATAGCGTTAT CCGCCATGGC ATCGACACCG AACTGTTTCA TCCGCCGCAA GGTGCCGAGG ACAGGATCGC AGCCACCAAC CTGCCGGGCG ATTATCTGAT CGGCTGCTTT GGTCGGGTGC GCCATCAAAA GGGCACCGAT CTATTCGTCA AAGCAATGAT CGAACTTCTA CCCCGCTATC CCGGCTGGAC AGCCGTGGTC TCCGGCCGCG TCACCCCGGA ACATAAAGGT TTTGCCGAGG GGCTGAAGGC GCAGATTGCC GCGGCCAGTC TGACGGAGCG GATCGTTTTT CTGGGCGAGG TCGAGGATAT CAAGCCGTGG TATCGGCGGC TGACGCTCTA TGTCGCGCCC TCGCGCAATG AAGGGTTTGG CCTGACGCCA CTGGAAGCCA TGGCGTCCGA AACCGTGGTG GTCGCATCGG ATGCCGGGGC CTATGCGGAA CTGATTGCCG AAGGGGCAAC CGGCGCCGTG GTTGCCGCCG ATGCCTATGC GCCGCTGCGT GATGCAATCG AGCCTTATCT GGCCGATCCC GGTCGCGCCT GCCTGCATGG CAAGGCGGCC GTTGCCCATG TGCGGGAAAA TTTCGCGCTT GCCAGAGAAG CGGCAGGGCT GGAGGCGGTC TATAGCCGAT TGCTCGGCAG GCCGGTCATC GCGCCGCCCG CGCCCCAACC ATAA
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Protein sequence | MMAKGTLCVL DPASILVVAP HFKRRLSGVT STVVQLIPQQ RRRGLAIATL GPGLPETMPA LTFAQMPALW KKPRGASHRV WHARRNLEML VGVVLRDVLR MPLKLLFTSA AQRHHSRYTR WLISKMDAVV ATSARSGSFL HVPHSVIRHG IDTELFHPPQ GAEDRIAATN LPGDYLIGCF GRVRHQKGTD LFVKAMIELL PRYPGWTAVV SGRVTPEHKG FAEGLKAQIA AASLTERIVF LGEVEDIKPW YRRLTLYVAP SRNEGFGLTP LEAMASETVV VASDAGAYAE LIAEGATGAV VAADAYAPLR DAIEPYLADP GRACLHGKAA VAHVRENFAL AREAAGLEAV YSRLLGRPVI APPAPQP
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