Gene Avi_3122 details

Gene Information

• Locus tag: Avi_3122
• Symbol: carB
• ID: 7388663
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 2593840
• End bp: 2597214
• Gene Length: 3375 bp
• Protein Length: 1124 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 643652067
• Product: carbamoyl phosphate synthase large subunit
• Protein accession: YP_002550251
• Protein GI: 222149294
• COG category: [E] Amino acid transport and metabolism; [F] Nucleotide transport and metabolism
• COG ID: [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ)
• TIGRFAM ID: [TIGR01369] carbamoyl-phosphate synthase, large subunit

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

CTGAAGGAAG AAGGCTACCG GGTCATCCTG GTCAATTCCA ACCCGGCAAC CATCATGACC 
GATCCGGGCC TGGCCGACGC AACCTATGTC GAGCCGATCA CCCCGGAAGT GGTCGCCAAG 
ATCATCGCCA AGGAACGCCC GGATGCACTG CTGCCGACCA TGGGCGGGCA GACGGCCTTG 
AACACCGCGC TCTCCTTGAA GCGCATGGGC GTGCTGGACC GCTATAATGT CGAGATGATC 
GGCGCCAAGC CTGCCGCCAT CGACATGGCC GAAGACCGCG CCCTGTTTCG GGAAGCCATG 
GCCCGCATCG GCCTTGAGAC TCCGAAATCC ATGCTGGCCA ATGCCACCGA AATCAAGGAT 
GCCGACCGCA AGACCCATGA AATTGCCCGC AACGAGGTAA AGGCCCGGCT TTCCGGCGAC 
GCGCTCGACA AGGCGCTGGA TGAGCTGGAA AACCAGTGGA ACCTCGGCGA AACCGACCGC 
AAGCAGCGCT ATATGAACCA TGCCATGGCG GTGGCAGCCC AGGCGCTTGA CGTTGTTGGC 
CTGCCCACCA TCATTCGCCC GTCCTTTACC ATGGGCGGCA CCGGCGGCGG CATTGCCTAT 
AACCGCTCGG AATTCTTCGA GATCATCGGC TCCGGCCTTG ACGCCTCGCC GACCACCGAA 
GTGCTGATCG AGGAATCGGT GCTGGGCTGG AAGGAATATG AAATGGAAGT GGTCCGCGAC 
AAGGCGGACA ATTGCATCAT CATCTGCTCC ATCGAAAATA TCGATCCGAT GGGCGTCCAT 
ACCGGCGACA GCATCACCGT TGCCCCGGCC CTGACGCTGA CGGACAAGGA ATACCAGATG 
ATGCGCAACG CTTCGATTGC GGTGCTGCGC GAAATTGGTG TTGAGACCGG CGGCTCCAAC 
GTGCAGTTCG CGGTCAATCC CAAAGACGGT CGTCTCGTCG TCATCGAGAT GAACCCGCGT 
GTGTCGCGCT CGTCGGCGCT GGCCTCCAAG GCGACCGGCT TCCCGATTGC CAAGATCGCC 
GCCAAGCTTG CGGTTGGCTA TACGCTGGAC GAGTTGGACA ACGACATTAC CGGCGGCGCG 
ACGCCCGCCT CCTTCGAGCC ATCGATTGAT TACGTCGTCA CCAAAATCCC GCGCTTTGCC 
TTCGAGAAAT TCCCTGGTGC CGAACCGACG CTGACCACTG CGATGAAATC GGTCGGCGAA 
GTCATGGCGA TTGGCCGCAC TTTCGCCGAA TCCTTGCAAA AGGCGCTGCG TGGCCTGGAA 
ACCGGCCTGA CCGGTCTGGA CGAAATCGAA ATCCCCGGCC TTGGCCAGGG CGACGACAAA 
AACGCCATCC GCGCCGCCAT CGGCACCCCG ACCCCGGACC GGCTGCGCAT GGTGGCCCAG 
GCGCTACGGC TCGGCATGTC GGAAGCCGAA GTGCATGAAG GCTGCAAGAT CGATCCGTGG 
TTCATCGCTC AGTTGAAGGC AATCACCGAT CTGGAAGCCC GCATCCGCGA ACATGGCCTG 
CCAGAAGACG CCGAAAATCT GCGGATGCTG AAAGCCAAGG GCTTTTCCGA TGCCCGCCTT 
GCCAGCCTGT CGGGCAAGCG TCCAAAGGAA GTGGCCGAGC TGCGCAACGG CCTCAATGTC 
CGCCCGGTCT TCAAGCGCAT CGATACCTGC GCTGCCGAAT TCGCGTCACC GACGGCTTAC 
ATGTATTCGA CCTATGAGAC GCCGTTCGTC GGCGCACTGC GCTCGGAAGC GCACGTGTCG 
GATCGCAAGA AAATCGTCAT CCTCGGCGGT GGCCCGAACC GCATCGGCCA GGGCATCGAG 
TTCGACTATT GCTGCTGCCA CGCCGCCTTC GCCCTGAAGG ATGCAGGTTT TGAAGCGATC 
ATGATCAACT GCAACCCGGA AACCGTCTCC ACCGACTATG ACACCTCCGA CCGCCTGTAT 
TTCGAGCCCC TGACGGCGGA AGACGTCATC GAAATCCTGC GCGCCGAACA GGAAAAGGGC 
GAAGTTGTCG GCGTTATCGT GCAGTTTGGC GGCCAGACGC CGCTGAAGCT GGCCGAAGCC 
CTGGAAAAGA ACGGCATCCC GATCCTCGGC ACCGCGCCTG ACATGATCGA TCTGGCCGAA 
GACCGCGACC GGTTCCAGAA GCTGTTGATG AAGCTGGACC TCAACCAGCC CAATAATGGC 
ATCGCCTATT CGGTCGAGCA GGCCCGCCTT GTCGCCTCTG AAATCGGCTT CCCGCTGGTG 
GTACGCCCAT CCTACGTGCT GGGTGGCCGG GCCATGCAGA TCATCCATAG TGAGAGCATG 
TTGCAGAGCT ACCTGCTGGA TACCGTGCCA GGCCTGGTGC CGGAAGCCAT CAAGCAGCGG 
TATCCAAATG ACAAGACGGG CCAGATCAAC ACCCTTCTCA GCAAGAACCC GCTGCTGTTC 
GATAGCTACC TCACCAACGC AATTGAGGTG GATGTCGATG CGCTGTGCGA TGGCGAAAGC 
GTCTTCGTCT CCGGTATCAT GGAGCATATC GAAGAGGCTG GTATCCATTC CGGCGACAGC 
GCCTGCTCGC TGCCATCACG CTCGCTGAGC ACCGAAGTCC TTGACGAGCT GGAGCGCCAG 
ACAGCCGCCA TGGCCAAGGC GCTGCATGTT GGCGGGTTGA TGAATGTGCA ATATGCCATC 
AAGGATGGGG TTATCTACGT TCTCGAGGTT AACCCACGCG CCTCGCGCAC CGTGCCGTTC 
GTGGCCAAGA CCATCGGCGC GCCGATTGCC AAGATCGCCG CCCGGATCAT GGCGGGTGAA 
AAGCTGGATG CGGCGATTGC CGCCTACGGC ACCAAGCCCG ATCCGCGCAA CTTGAAGCAT 
ATCGCGGTCA AGGAAGCGGT GTTCCCGTTT GCCCGCTTCC CCGGCGTCGA TACGCTGCTT 
GGCCCGGAAA TGCGCTCGAC CGGCGAAGTG ATCGGCCTAG ATACCAGCTT TGCGTTGGCC 
TTCGCCAAGA GCCAGCTCGG CGCCAGCGTC GAGCTTCCCC GCGACGGCGC GGTGTTCGTG 
TCGGTGCGTG ATGAGGACAA GGTCCGCATT CTGCCCGCCA TCAAGCTGTT GACCTCCATC 
GGCTTCAAGG TTCTGGCCAC CGGCGGCACG CAACGCTTCC TCGCCGAACA GGGCATCGAG 
GCGGTCAAGA TCAACAAGGT GCTGGAAGGC CGTCCGCATA TCGAGGACGC CATCCGCAAC 
CGGCAGGTCC AGCTGGTGAT CAATACCACC GATAGCAACA AGGCGATCTC GGACTCCAAA 
TCGCTGCGCC GCGCGGCCCT GATGCAGAAA GTGCCTTATT ACACCACGAT GGCCGGTGCG 
CTTGCCGCTG CCGAAGCCAT TGAGGCGCTG AAAAAGGGCC AGTTGGAAGT TCGTCCGCTG 
CAAAGCTATT TCTGA 

 

Protein sequence

MKEEGYRVIL VNSNPATIMT DPGLADATYV EPITPEVVAK IIAKERPDAL LPTMGGQTAL 
NTALSLKRMG VLDRYNVEMI GAKPAAIDMA EDRALFREAM ARIGLETPKS MLANATEIKD 
ADRKTHEIAR NEVKARLSGD ALDKALDELE NQWNLGETDR KQRYMNHAMA VAAQALDVVG 
LPTIIRPSFT MGGTGGGIAY NRSEFFEIIG SGLDASPTTE VLIEESVLGW KEYEMEVVRD 
KADNCIIICS IENIDPMGVH TGDSITVAPA LTLTDKEYQM MRNASIAVLR EIGVETGGSN 
VQFAVNPKDG RLVVIEMNPR VSRSSALASK ATGFPIAKIA AKLAVGYTLD ELDNDITGGA 
TPASFEPSID YVVTKIPRFA FEKFPGAEPT LTTAMKSVGE VMAIGRTFAE SLQKALRGLE 
TGLTGLDEIE IPGLGQGDDK NAIRAAIGTP TPDRLRMVAQ ALRLGMSEAE VHEGCKIDPW 
FIAQLKAITD LEARIREHGL PEDAENLRML KAKGFSDARL ASLSGKRPKE VAELRNGLNV 
RPVFKRIDTC AAEFASPTAY MYSTYETPFV GALRSEAHVS DRKKIVILGG GPNRIGQGIE 
FDYCCCHAAF ALKDAGFEAI MINCNPETVS TDYDTSDRLY FEPLTAEDVI EILRAEQEKG 
EVVGVIVQFG GQTPLKLAEA LEKNGIPILG TAPDMIDLAE DRDRFQKLLM KLDLNQPNNG 
IAYSVEQARL VASEIGFPLV VRPSYVLGGR AMQIIHSESM LQSYLLDTVP GLVPEAIKQR 
YPNDKTGQIN TLLSKNPLLF DSYLTNAIEV DVDALCDGES VFVSGIMEHI EEAGIHSGDS 
ACSLPSRSLS TEVLDELERQ TAAMAKALHV GGLMNVQYAI KDGVIYVLEV NPRASRTVPF 
VAKTIGAPIA KIAARIMAGE KLDAAIAAYG TKPDPRNLKH IAVKEAVFPF ARFPGVDTLL 
GPEMRSTGEV IGLDTSFALA FAKSQLGASV ELPRDGAVFV SVRDEDKVRI LPAIKLLTSI 
GFKVLATGGT QRFLAEQGIE AVKINKVLEG RPHIEDAIRN RQVQLVINTT DSNKAISDSK 
SLRRAALMQK VPYYTTMAGA LAAAEAIEAL KKGQLEVRPL QSYF