| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3116 |
|---|
| Symbol | |
|---|
| ID | 7388661 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 2591481 |
|---|
| End bp | 2592164 |
|---|
| Gene Length | 684 bp |
|---|
| Protein Length | 227 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 643652065 |
|---|
| Product | Glutathione S-transferase protein |
|---|
| Protein accession | YP_002550249 |
|---|
| Protein GI | 222149292 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0625] Glutathione S-transferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.324582 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTACCG TCCATTATCT GGAGCATTCC AGGGCGCACC GCATTCTCTG GCTACTGGAA
GAGCTGGGAT TGTCTTATGA GGTGAAAACC TACAAGCGCG GTGCTGATAT GCATGCACCG
GCGGCATTGA AGGCCGTGCA TCCGCTGGGA AAATCACCTG TCATCGAAGA CGAGGGCCGG
ATCTTCGCCG AAAGCGGTGC CATTATCGAA TATCTGATCG ACACTTATGG CGCCGATACC
AATGGCAAGA CGGTTTTGCG TCCGGCACCG GGCAGCGACG CTTTCCTGCG CTACCGTTAC
TGGCTGCATT ATGCCGAAGG CTCGGCCATG CCCCTGCTGG TGATGAAACT TGTATTCTCA
AGACTATCCA AGCAAATGCC GTTTTTGTTG CGCGGTGTGG CCCAGCGGAT CTCCGATGGC
GTTTGCTGCA AGATGATCGA TCCGCAGATC GGCGAACATC TGGCCTTCTG GCAGGCGGAA
TTGCGCAAGG ACGGTTATTT TGCCGGACCG GACTTTACCG CCGCCGATAT CGCCATGAGC
TTCCCGGTGG AATCGGTGCT GTCGATTTCC GGCGATACGG GCGATGTTAC AGTCCTTCGT
TCCTATCTTT CCACAATCCG TGCCAGGCCG GCCTATCAGC GCGCCCTGGA ACGTGGGGGT
GCCTATATGT TCGCCAAGAC CTGA
|
|---|
| Protein sequence | MITVHYLEHS RAHRILWLLE ELGLSYEVKT YKRGADMHAP AALKAVHPLG KSPVIEDEGR
IFAESGAIIE YLIDTYGADT NGKTVLRPAP GSDAFLRYRY WLHYAEGSAM PLLVMKLVFS
RLSKQMPFLL RGVAQRISDG VCCKMIDPQI GEHLAFWQAE LRKDGYFAGP DFTAADIAMS
FPVESVLSIS GDTGDVTVLR SYLSTIRARP AYQRALERGG AYMFAKT
|
|---|
| |