| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3115 |
|---|
| Symbol | |
|---|
| ID | 7388660 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 2590419 |
|---|
| End bp | 2591318 |
|---|
| Gene Length | 900 bp |
|---|
| Protein Length | 299 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643652064 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002550248 |
|---|
| Protein GI | 222149291 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2321] Predicted metalloprotease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0633629 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAACTGG ATGGGCGTCG TCAGTCCGAA AATCTCGAGG ATGTCAGGGG TGCATCAGGC
GGTGGCGGCT TTGGCCGGCG CGGTATCCGG CTGCCGATTG GCAGCAGTGG GCGTGGTTTG
AGTTTTTCAA CCATCATCGT TCTGGTGCTG ATCTATTTCG GTCTTCGGCT GATGGGCATC
GATATGTTGC AATTGCTGGA GGAGGGCGGT AGCTCCGCCC CGTCTTCCTA TCAGCAGCAA
TCCGAGCAAA CGACGCCGGC TCAGGACGAG ATGAAAGTCT TCGTCAGCCG CGTGCTGGCG
TCCACCGAGG ATGTCTGGAC CGCGGCATTT CAGGAGCGCG GCGCGACCTA TGAGATGCCG
AAGCTGCGGC TGTTTTCCGG TCAATATCCC TCTGCCTGTG GTGCGGCATC CGCTGCGACC
GGGCCGTTCT ACTGCCCTGG GGATCGCCGT ATCTATCTCG ATACCGCGTT TTTCACCGAG
CTTTCCAAAC GGTTTCAGGC GTCTGGCGAT TTTGCTCAGG CCTATGTGAT TGCCCATGAA
GTCGGCCATC ACGTGCAGAA CCTGACCGGG ATTCTGCCGA AATTCAACCA GATGCGCAGC
TCGATGAATG CCGCCGATGC CAACCGGATG TCGGTTCGTG TCGAATTGCA GGCCGATTGC
TTTGCCGGGA TCTGGGGTCG GAAGGCCGAT CAGCAGGGAT TGCTCTCGGC GGGCGATCTG
CAGGAAGCAT TGAACGCCGC CCGGCAGATT GGCGACGATA CGATTCAGAA GCGGTCCCAG
GGCTATGTTG TGCCTGAGAG TTTTAACCAC GGCTCCGCCG CACAGCGGAT GGCATGGTTC
AAAAAAGGCT ATGACCAGGG CCGGATGGAT GCCTGCGACA CGTTTTCCGG CCCGATTTGA
|
|---|
| Protein sequence | MELDGRRQSE NLEDVRGASG GGGFGRRGIR LPIGSSGRGL SFSTIIVLVL IYFGLRLMGI
DMLQLLEEGG SSAPSSYQQQ SEQTTPAQDE MKVFVSRVLA STEDVWTAAF QERGATYEMP
KLRLFSGQYP SACGAASAAT GPFYCPGDRR IYLDTAFFTE LSKRFQASGD FAQAYVIAHE
VGHHVQNLTG ILPKFNQMRS SMNAADANRM SVRVELQADC FAGIWGRKAD QQGLLSAGDL
QEALNAARQI GDDTIQKRSQ GYVVPESFNH GSAAQRMAWF KKGYDQGRMD ACDTFSGPI
|
|---|
| |