| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3097 |
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| Symbol | |
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| ID | 7388644 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 2570619 |
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| End bp | 2572154 |
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| Gene Length | 1536 bp |
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| Protein Length | 511 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643652048 |
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| Product | GGDEF family protein |
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| Protein accession | YP_002550232 |
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| Protein GI | 222149275 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.017484 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTAAACC AGCCATTTGA GGTTTCCGAG CCTGATCGGA TCGACCGGCT GACCCGCCGT
CTGGAGCGCG AGCGCGCGGC CCGCCGCCAA GCCGAGACAT TGCTGGAAGC GCGTGCGCGT
GAACTTTACA TGGCCAATTG CCAATTGGCA CGACAGGCGG AAGATCTCGA ACAGCGGGTC
ATGCAGCGCA CGGAGGAGCT GGTTCAGGAG CGCGAACGTG CCATTGCACT GGCCCAGCAG
GACCAATTGA CCGGGCTTGC CAATCGTCGC AGCTTTACCG CGGTTTTGAC CGACGCTTGC
CAGAAGAGCC GCCTTCGAGG CGACCGTGTT ACGGTTGTTC TTGTTGATAT GGATAGGTTC
AAGGCGATCA ACGACGCTTA TGGTCATGAG GCGGGGGATG CGGTGCTGCG GGAATTTGCC
CGCCGCCTGA TGGTTGCGGC TGGACCTGGA ACGGTGGCAC GGCTGGGTGG TGACGAATTT
GCATTGATTC TCGACCATCT GTCGGATGTG ACGGCCGATC ATGCCTTTGT CTCAAGTTTT
CGCGCCAGTT TGCAGGAGCC GGTTCTCTTC AACGGCAAGC GCCTGGAGGT CTCGGCGTCC
ATCGGATATG CGAGCCTGCC GGATCATGCC GCATCGTCCA CCGAATTGCT GCGGCATGCC
GATATGGCGC TTTACGTTTC CAAGAAAGCT GGGCTGTCGC TGGCGACCGC TTTTGACGAC
GACCTTTGGG CCGAGGCCAA CGAGCGACGC TTGCTGGAGC TGGAACTGGT GCTGGCCATG
GACCGCCATG AAATCATGCC CTGGTACCAG CCGATCGTTG ATGGAGCCAG CAAGCGGATA
CTGGGGGTGG AAGTGCTGGC ACGCTGGCAG CATCCCTATC GCGGTCTGGT GCTGCCGGGT
GTATTTCTGC CACTGGCGGA AGAGCGCAAC CTTCTGGATC GGTTGTTTGC GCAGGTCGCC
CGCGCCGCCT GTGCGCAAAC AGCGCCGCTG GTCAAGGCTG GCAAGCTCAA CTACGTGTCG
GTCAATATTT CTCCAAGCCA GTTCAAGTCC GGTAATCTGG CGATGGTCAT CGCGTCCATC
CTGGAACAGA CCGGTTTTCC AGCCACGGCA TTGGTGGTGG AGATTACCGA GGACCTGATC
ATGTCGGACC TGCTGCGGGC CGGGCGCGAG CTTTCCGAAC TTTCGCGGCT CGGCGTTCGG
GTTGCGCTCG ATGATTTCGG CACCGGCTAT TCGAATATTT CCTCTCTCAG CAGCCTGCCG
ATCCAATGGT TGAAACTAGA CCGTAGCCTG ATCAGCCGGG TTGGGGACGA CCGAGTTGGG
CAGGTTATCG TTCAGGCCGT GCTGCAAATG GCCCAGGCGC TCGGCATCGA TGTTGTCGCG
GAAGGTATCG AAACGGAGGT GCAGGCACGC TGGCTTGTGG AAGCCGGATG CCGCAAACAT
CAGGGTTTTC TCTATGGCCG CCCGGCACCT CTGGAAGACT TGCTGTGTTT CTCGCAACCG
GAACGTCTAA GCCTTGCAGC TGGAAAGAGC CCTTGA
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| Protein sequence | MVNQPFEVSE PDRIDRLTRR LERERAARRQ AETLLEARAR ELYMANCQLA RQAEDLEQRV
MQRTEELVQE RERAIALAQQ DQLTGLANRR SFTAVLTDAC QKSRLRGDRV TVVLVDMDRF
KAINDAYGHE AGDAVLREFA RRLMVAAGPG TVARLGGDEF ALILDHLSDV TADHAFVSSF
RASLQEPVLF NGKRLEVSAS IGYASLPDHA ASSTELLRHA DMALYVSKKA GLSLATAFDD
DLWAEANERR LLELELVLAM DRHEIMPWYQ PIVDGASKRI LGVEVLARWQ HPYRGLVLPG
VFLPLAEERN LLDRLFAQVA RAACAQTAPL VKAGKLNYVS VNISPSQFKS GNLAMVIASI
LEQTGFPATA LVVEITEDLI MSDLLRAGRE LSELSRLGVR VALDDFGTGY SNISSLSSLP
IQWLKLDRSL ISRVGDDRVG QVIVQAVLQM AQALGIDVVA EGIETEVQAR WLVEAGCRKH
QGFLYGRPAP LEDLLCFSQP ERLSLAAGKS P
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