Gene Avi_3060 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_3060 
Symbol 
ID7388621 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand- 
Start bp2543206 
End bp2543859 
Gene Length654 bp 
Protein Length217 aa 
Translation table11 
GC content61% 
IMG OID643652026 
Producthypothetical protein 
Protein accessionYP_002550210 
Protein GI222149253 
COG category[S] Function unknown 
COG ID[COG4382] Mu-like prophage protein gp16 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones7 
Plasmid unclonability p-value0.693668 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCTCCT CCATCGCCGC CATTCACGTC GCCAAGAAGC AGCTCGGCCT GGATGAGGAC 
ACCTACCGGG CCAAGCTCAA AAACATCACC GGCAAGCCAT CCGCCAAAGA CATGACAGAG 
GCCGAGCGCC AGAAGGTGCT GAAGGTGTTC CGGGGTGAAG GTTTTGCTCC GGCTCCGGCC 
GCAGCAGGCA GGCGCAAGCC GCTTGCTGGC CGGTACGCAA AGAAGCTCCA GGCGTTGTGG 
ATCGCGGGCT GGAACCTCGG TGTTGTTGAG AACCGGGAGG ATACGGCCCT TATCGCCTTT 
GTGACCCGTC AGACCGGATT GGATCACGTC CGGTTCCTGC ACCATGCCGA CGATGCGAAA 
TCGGCCATCG AGGGTCTGAA ACGTTGGCTC TCCCGTGAAG CTGGCGTCGG CTTTGGGAAT 
ACCAATGGGT ATGATTGGCT GGCCAGCGAC GGGGCAAAGA TCGCCTGGGC GCAGTGGAAG 
ATCCTGCATC CCGGCTGCAG CCTGATGGTT CGCCAGGGCT TTGATGCCGA GATTATCTCC 
CTTGCTGGTG AACAGGTGAG CTGGATTGGC GATCTCAAGG CAAGCCACTG GCAGATGGTG 
ATGAATGCAC TGGGCCAGCG CATCCGGGAT CGAGGAGACC AGGTCCGTGG CTGA
 
Protein sequence
MTSSIAAIHV AKKQLGLDED TYRAKLKNIT GKPSAKDMTE AERQKVLKVF RGEGFAPAPA 
AAGRRKPLAG RYAKKLQALW IAGWNLGVVE NREDTALIAF VTRQTGLDHV RFLHHADDAK 
SAIEGLKRWL SREAGVGFGN TNGYDWLASD GAKIAWAQWK ILHPGCSLMV RQGFDAEIIS 
LAGEQVSWIG DLKASHWQMV MNALGQRIRD RGDQVRG