Gene Avi_2979 details

Gene Information

• Locus tag: Avi_2979
• Symbol: omp
• ID: 7386145
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 2489104
• End bp: 2489742
• Gene Length: 639 bp
• Protein Length: 212 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 643651972
• Product: outer membrane protein
• Protein accession: YP_002550157
• Protein GI: 222149200
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG3637] Opacity protein and related surface antigens

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACAAAC TGACCCTCCT TGCAACCGCT GCAACCCTCT TCGTATCGAC AGGCATTGCC 
ATGGCCGCCG ATGCAGTCGA CCAGGTTCCG ACAGCTCCTG CTGCTGTTGA AACCCCTGCG 
GCGTTTTCAT GGGCAGGCGG CTATATCGGC GTTTACGGTG GTTACGGCTG GCTGGATGCC 
ACACTGTCGC AGGGCGGCGC ATCGCTCTCG GATAATTTCG ATGGCGGTCG CATTGGCGGC 
TTTGGCGGCT GGAATTTCGA TGTCGGCCAC AACGTGATTC TCGGCGTAGA AGCCGATGTG 
AACTACGACT GGAACGAAAA CAACTATTCC GGCGTCAAGG TGGGCATGGA TGTCTCCGGC 
TCTGCCCGCG CCCGCGCCGG TTACGCCATT GACCGCGCCC TGATCTTTGT GGCTGGCGGC 
TGGACGGCGG ACAGAACCTA TATCAAGTCT TCGTCCGGCG ATTTCAACAA GACCCTGAAC 
GGCTGGACCA TCGGCGCTGG TGTGGACTAT GCGATTACCA ATCGCATCTT CACCCGCCTC 
GAATATCGCT ACAACGATTA CGGCACCAAA AATATCAGCG GCATCGATTT CGACAGCAAG 
CAGAATGTCG TCAATCTCGG CATCGGCATC AAATTCTGA 

 

Protein sequence

MNKLTLLATA ATLFVSTGIA MAADAVDQVP TAPAAVETPA AFSWAGGYIG VYGGYGWLDA 
TLSQGGASLS DNFDGGRIGG FGGWNFDVGH NVILGVEADV NYDWNENNYS GVKVGMDVSG 
SARARAGYAI DRALIFVAGG WTADRTYIKS SSGDFNKTLN GWTIGAGVDY AITNRIFTRL 
EYRYNDYGTK NISGIDFDSK QNVVNLGIGI KF