| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2966 |
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| Symbol | metH |
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| ID | 7386137 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 2478217 |
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| End bp | 2481990 |
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| Gene Length | 3774 bp |
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| Protein Length | 1257 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643651964 |
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| Product | B12-dependent methionine synthase |
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| Protein accession | YP_002550149 |
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| Protein GI | 222149192 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain
[COG1410] Methionine synthase I, cobalamin-binding domain |
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| TIGRFAM ID | [TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTCGATC AATTGTTTGG ACGTGAAGGG GCGAACCGCG ACGGCGCAGA GATCCTCAAA
GCTCTGCAAC AGGCGGCGCG TGAGCGTATT CTGATCCTCG ACGGTGCTAT GGGCACGGAA
ATTCAGGGCC TTGGCCTGGA TGAAGATGAT TTTCGCGGCG AGCGTTTCAT TGGTTGCGCC
TGCCACCAGA AGGGCAATAA TGACCTTCTT ATCCTGACCC AGCCGGAAGC CATTGAAGAC
ATCCATTTTC GCTACGCGAT GGCGGGGGCG GATATTGTTG AGACCAATAC CTTTTCCTCG
ACCCGCATCG CCCAGGCGGA TTACGAAATG GAAGGCGCGG TCTACGATCT CAACAAGCAT
GGGGCGCAGG TCGTGCGCCG CGCGCTTCTT CGTGCCGAGC GCGAAGATGG CAAGCGCCGT
TTTGTGGCCG GTGCGATTGG CCCGACCAAC CGCACGGCGT CCATCTCGCC CGACGTCAAC
AATCCCGGCT ACCGCGCTGT GTCGTTTGAT GATCTGCGCC TTGCCTATGG CGAGCAGATC
GATGGCCTGA TTGATGGCGG TGCCGATCTC ATCCTGATCG AGACGATTTT CGATACGCTG
AACGCCAAGG CGGCGATTTT TGCCTGTGAG GAGCGCTTCC TTGCCAAGGG CATTCGTCTG
CCGGTGATGA TTTCTGGCAC GATCACCGAC CTTTCAGGCC GCACCCTATC TGGCCAGACG
CCTTCGGCGT TCTGGAACTC GGTGCGCCAT GCCAAGCCAT TTACCATTGG CCTGAACTGC
GCGCTGGGTG CCGATGCCAT GCGTCCGCAT TTGCAGGAAC TGTCGGGCCT TGCCGATACC
TTCGTTTCTG CTTACCCCAA TGCCGGTTTG CCGAATGAAT TTGGCCAGTA TGACCAAAGC
CCTGAGTATA TGGCCAAGCT TGTGGAAGGC TTTGCCGAAG AAGGCATCGT CAATGTGGTT
GGCGGCTGCT GCGGGTCCAC ACCTGCGCAT ATCCAGGCCA TTGCCGAAGC GGTAAAGGGA
AAGACGCCAC GCCAGCCGGT CGAGCATCGT CCTTTCATGT CACTCTCTGG CCTCGAGCCT
TTCGTGCTGA CCAAGGATAT TCCCTTCGTC AATGTCGGCG AGCGCACCAA CGTCACCGGT
TCGGCCAAAT TCCGCAAGCT GATCACCGCT GGTGATTACA ACGCCGCCCT CGTGGTGGCG
CGTGATCAGG TCGAAAACGG CGCGCAGATC ATCGACATCA ACATGGATGA AGGTCTGATC
GATTCTGAAA AGGCCATGGT TGAGTTCCTC AACCTGATTG CCGCAGAACC CGACATTGCC
CGCGTGCCTG TGATGATCGA TTCATCCAAG TTCCAGATCA TCGAATCCGG CCTCAAATGC
GTACAGGGCA AGCCGATCGT CAATTCCATC TCGCTGAAGG AAGGCGAGGA GAATTTTGTC
GCCCAAGCCA AGCTGATCCG CAATTACGGT GCCGCCGTTG TTGTCATGGC TTTTGACGAG
ACAGGGCAGG CCGATACTTA CGAGCGCAAG GTTGCGATCT GTGAGAGGGC CTACAAAATT
CTCACCGAAG ACGCGGGCTT CTCACCGGAA GACATCATCT TCGATCCCAA CGTGTTTGCC
GTTGCTACCG GCATTGAAGA ACACAACAAT TACGGTGTTG ATTTTATTGA GGCCACCCGC
ACCATTCGCC AGCGCATGCC GCTGGTGCAT ATTTCCGGCG GCGTTTCCAA CCTGTCCTTC
TCGTTCCGCG GCAATGAGCC GGTGCGCGAG GCGATGCATG CCGTGTTTCT CTACCACGCC
ATTCAGGCGG GTATGGATAT GGGTATTGTC AACGCTGGCC AGTTGGCGGT GTATGAAAGC
ATTGATGCCG AACTGCGCGA GGCCTGCGAG GACGTGGTGC TGAACCGCCG TGAAGACGGC
ACGGAACGGC TGCTGGAAAT CGCCGAGCGC TATCGCGGCA CTGGCGAGGC GAAAGCCCGC
GTGCAGGATA TGTCCTGGCG CGAACTCCCC GTGGAGAAGC GGCTGGAGCA TGCTTTGGTC
AACGGCATTA CCGAGTTTAT CGATGCTGAT ACTGAGGAAG CGCGGCAGAA TGCGGCGCGG
CCTCTGCACG TCATTGAAGG CCCGCTGATG GCGGGCATGA ATGTGGTGGG CGATCTGTTT
GGCGCGGGCA AAATGTTCCT GCCGCAGGTG GTCAAATCCG CCCGCGTGAT GAAGCAGGCC
GTGGCCGTGC TGCTGCCCTA CATGGAAGAA GAAAAGCGCG CCAATGGCGG CACAGGCGAG
CGCGAGGCGG CTGGCAAAAT CCTGATGGCC ACCGTGAAGG GCGACGTGCA CGACATTGGC
AAAAACATTG TCGGCGTGGT TTTGGCCTGC AACAATTACG AGATCATCGA CCTTGGCGTG
ATGGTGCCTG CGGCGAAGAT TCTGGAAGTG GCGATCAAGG AAAATGTCGA TATCATCGGC
CTTTCCGGCC TGATCACCCC ATCGCTGGAT GAAATGGTGC ATGTGGCAGC CGAGATGCAG
CGCCAAGGCT TTAACGTGCC GCTGCTGATT GGTGGAGCCA CCACCAGCCG GGTGCATACG
GCGGTGAAAA TCCATCCGCA ATATCAGAAG GGCCAAGCGG TTTACGTGCT GGATGCCAGC
CGCGCCGTGG GCGTTGTCTC GTCCTTGCTG TCGCCCGATA CCCGCGACAC CACCATTGAA
ACCTTGCGCA CGGAATATGC CAAGGTGGCC GATGCCCACG CCCGCGCCGA GCTGGAAAAA
CAACGCCTTC CCATTTCCCG CGCCCGCGCC AACGCCGCCA AGGTGGATTG GGCGAGCTAC
AAGCCGAAGA AACCAAGTTT CACCGGCATC AAGGTTTTTG AGAATTACGA CCTCAAAGAG
TTGGCGAAAT ACATCGACTG GACACCTTTC TTCCAGACAT GGGAGCTGAA AGGCCGCTAT
CCTGCTATTC TGGAAGATGA AAAGCAGGGC GAAGCCGCCC GCGCGCTCTA TGCCGATGCG
CAAGCCATGC TGGCAAAAAT CATCGACGAG ACATGGTTCC GCCCCCGTGC GGTGATCGGC
TTCTGGCCCG CCAACACCGT TGGCGATGAC ATCCGGCTGT TTGCCGATGA AGAGCGTAGC
CAGGAACTGG CCACCTTCTT CACGCTCCGC CAGCAGCTTT CCAAGCGCGA TGGCCGCCCG
AATGTCGCCC TGAGCGATTT CGTCGCCCCG GTTGATAGTG GCGTGGAAGA TTACGTCGGC
GGGTTCGTGG TGACGGCAGG TATCGAAGAA GTGGCGATCT CTGAGCGGTT CGAGCGCGCC
AATGATGATT ACTCCTCCAT CATGGTCAAG GCATTGGCCG ACCGCTTCGC CGAAGCCTTC
GCCGAGCGCA TGCACGAGCG CGTGCGCAAG GAGTTCTGGG GCTACGGCGC AGACGAAACC
TATACACCGG AAGAGCTGAT CTCCGAATCC TACGCCGGTA TCCGCCCAGC CCCCGGCTAT
CCTGCCCAGC CAGACCACAC CGAAAAGGTC ACGCTGTTCA ACCTGCTGGA TGCGACCGCC
ACCACGGGCG TGACGCTGAC CGAAAGCTAC GCCATGTGGC CCGGCTCATC CGTCTCCGGC
ATCTATATCG GCCACCCCGA TAGCTATTAT TTCGGCGTTG CCAAGGTAGA GCGCGATCAG
GTGGAAGATT ACGCCGCCCG TAAGGGGATG GAAGTGCGCG AGATTGAGCG CTGGCTGGGG
CCAGTGCTGA ATTACGTGCC GAAGGCAGCG GTGGAAGAGG ATGCTGCGGC GTAA
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| Protein sequence | MLDQLFGREG ANRDGAEILK ALQQAARERI LILDGAMGTE IQGLGLDEDD FRGERFIGCA
CHQKGNNDLL ILTQPEAIED IHFRYAMAGA DIVETNTFSS TRIAQADYEM EGAVYDLNKH
GAQVVRRALL RAEREDGKRR FVAGAIGPTN RTASISPDVN NPGYRAVSFD DLRLAYGEQI
DGLIDGGADL ILIETIFDTL NAKAAIFACE ERFLAKGIRL PVMISGTITD LSGRTLSGQT
PSAFWNSVRH AKPFTIGLNC ALGADAMRPH LQELSGLADT FVSAYPNAGL PNEFGQYDQS
PEYMAKLVEG FAEEGIVNVV GGCCGSTPAH IQAIAEAVKG KTPRQPVEHR PFMSLSGLEP
FVLTKDIPFV NVGERTNVTG SAKFRKLITA GDYNAALVVA RDQVENGAQI IDINMDEGLI
DSEKAMVEFL NLIAAEPDIA RVPVMIDSSK FQIIESGLKC VQGKPIVNSI SLKEGEENFV
AQAKLIRNYG AAVVVMAFDE TGQADTYERK VAICERAYKI LTEDAGFSPE DIIFDPNVFA
VATGIEEHNN YGVDFIEATR TIRQRMPLVH ISGGVSNLSF SFRGNEPVRE AMHAVFLYHA
IQAGMDMGIV NAGQLAVYES IDAELREACE DVVLNRREDG TERLLEIAER YRGTGEAKAR
VQDMSWRELP VEKRLEHALV NGITEFIDAD TEEARQNAAR PLHVIEGPLM AGMNVVGDLF
GAGKMFLPQV VKSARVMKQA VAVLLPYMEE EKRANGGTGE REAAGKILMA TVKGDVHDIG
KNIVGVVLAC NNYEIIDLGV MVPAAKILEV AIKENVDIIG LSGLITPSLD EMVHVAAEMQ
RQGFNVPLLI GGATTSRVHT AVKIHPQYQK GQAVYVLDAS RAVGVVSSLL SPDTRDTTIE
TLRTEYAKVA DAHARAELEK QRLPISRARA NAAKVDWASY KPKKPSFTGI KVFENYDLKE
LAKYIDWTPF FQTWELKGRY PAILEDEKQG EAARALYADA QAMLAKIIDE TWFRPRAVIG
FWPANTVGDD IRLFADEERS QELATFFTLR QQLSKRDGRP NVALSDFVAP VDSGVEDYVG
GFVVTAGIEE VAISERFERA NDDYSSIMVK ALADRFAEAF AERMHERVRK EFWGYGADET
YTPEELISES YAGIRPAPGY PAQPDHTEKV TLFNLLDATA TTGVTLTESY AMWPGSSVSG
IYIGHPDSYY FGVAKVERDQ VEDYAARKGM EVREIERWLG PVLNYVPKAA VEEDAAA
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