| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2948 |
|---|
| Symbol | |
|---|
| ID | 7386123 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 2464230 |
|---|
| End bp | 2465330 |
|---|
| Gene Length | 1101 bp |
|---|
| Protein Length | 366 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643651950 |
|---|
| Product | ABC transporter substrate binding protein |
|---|
| Protein accession | YP_002550135 |
|---|
| Protein GI | 222149178 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1840] ABC-type Fe3+ transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAACATCC GTTTGCACCG CATTCTTTCC CTCTCGACCG CCATGGTCGT CGCATCGGCC
GCCTATGCGA GCGCCGAGCC AAGCGCCGAG CTGATCACAG CTGCCAAAAA AGAAGGCATG
CTGACCACCA TCGCCCTGCC CCATGACTGG TGCGGCTATG GTGACGTGAT CGCCGGTTTC
AAGAAAAAAT ACCCTGAGAT CAAGGTCAAC GAGCTGAACC CGAATGCAGG TTCCGGCGAC
GAAATCGAAG CGATCAAGGC CAATAAGGGC AATACCGGCC CGCAGGCTCC CGATGTTATC
GACGTCGGCC TGTCCTTCGG TCCTGCCGCC AAGAAAGACG GCCTCGTTCA GCCCTACAAG
GTTTCCACCT GGGATTCGAT CCCCGCTTCG GCCAAGGATG CCGACGGCTA TTGGTATGGC
GATTATTACG GCGTTCTGGC CATCGGTGTG AACAAGGATA TCGTCAAGGA CGTTCCGAAG
AGCTTTGCCG ATCTGACCGC TTCCAAATAT GCCAATTCCG TTGCCATGCC TGGCGATCCA
CGCACCGGCA ATAGCTCGAT GATGACGGTT TATGCCGCTG GCGTCGCGCA GTCCGGCAAG
ACTGGTGCCG ATGCCGCCAA GGCAGGCATC GAGTTCATGA AGTCGCTGAA GGAAAAGGGC
AATCTCGTGC CGGTCAACGG CTCGGCCCAG AACATGGCGC AGGGCACCAC GCCGATCCTG
TTCGATTGGG ACTATAACGT GCTTGCCATG CGCGACAAGC TGGCTGGCAA CCCGCCGATG
GACGTTGTCG TTCCCTCGGA TTCGGTCATC GCCGGCGTTT ACGTTCAGGC GATTTCGGCT
TTCGCGCCAC ATCCGAACGC TGCGAAACTG TGGATGGAAT ATCTCTATTC CGACGAAGGT
CAGCTCGGCT GGCTGGCTGG CTATTGCCAT CCGATCCGCT TCAACGATCT GGCTGAAAAG
AAGAAGATTC CGCAGGCACT GCTCGACAAG ATGCCGGATG CCGCAGGCTA TGCCAAGGCG
ATCTTCCCCA CTCTGGACGA ACAGTCCGCT GCCAAGGCAG TGGTTGCCGC CGATTGGGCA
AAGCAGATGG GCGCGCAATA A
|
|---|
| Protein sequence | MNIRLHRILS LSTAMVVASA AYASAEPSAE LITAAKKEGM LTTIALPHDW CGYGDVIAGF
KKKYPEIKVN ELNPNAGSGD EIEAIKANKG NTGPQAPDVI DVGLSFGPAA KKDGLVQPYK
VSTWDSIPAS AKDADGYWYG DYYGVLAIGV NKDIVKDVPK SFADLTASKY ANSVAMPGDP
RTGNSSMMTV YAAGVAQSGK TGADAAKAGI EFMKSLKEKG NLVPVNGSAQ NMAQGTTPIL
FDWDYNVLAM RDKLAGNPPM DVVVPSDSVI AGVYVQAISA FAPHPNAAKL WMEYLYSDEG
QLGWLAGYCH PIRFNDLAEK KKIPQALLDK MPDAAGYAKA IFPTLDEQSA AKAVVAADWA
KQMGAQ
|
|---|
| |