| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2881 |
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| Symbol | lpxC |
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| ID | 7385991 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 2401482 |
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| End bp | 2402387 |
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| Gene Length | 906 bp |
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| Protein Length | 301 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643651900 |
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| Product | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase |
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| Protein accession | YP_002550085 |
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| Protein GI | 222149128 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0774] UDP-3-O-acyl-N-acetylglucosamine deacetylase |
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| TIGRFAM ID | [TIGR00325] UDP-3-0-acyl N-acetylglucosamine deacetylase |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0559808 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | CTGAAGGGGA TCGGCGTGCA TTCCGGTCAG CCTGTTACCA TGAGCTTTCT GCCTGCCGAA
GCCGGAACTG GCATCGTGTT CCACCGCCAG CATGCCAATG GTTCCGTTAC CGAGCTGAAG
GCTGTCGCCT CGCAGGTCGG TAATACCGAT CTCAGCACCG TTCTGGGCTC TTCGCCAACC
CATTGGGTCG CCACCGTCGA GCATGTGATG GCGGCCATTT ATTCGCTGGG CCTCGACAAT
CTGGTGGTTG AGGTCGATGG ACCGGAAACC CCCGTCATGG ACGGTAGTTC CGCCGTCTAT
ATCGATGCCA TTGAGCAGGC TGGCATTGTC AGCCTCGGTG TCAAGCGCCG CTATATCAGA
GTGATGAAGC CTGTTCGGGT CGACAATGGC GCGTCCTGGG CTGAGTTTCG CCCCTATGAA
GGGACGCGCT TTGAAGTGGA AATCGATTTC GATTGCCCGC TGATTGGCCG CCAGTCCTGG
CAGGGCGACC TGACACCGCA GAGCTTCAAG CAGGAATTGT CGCGCGCCCG TACCTTCGGT
TTCATGCGCG ATGTCGAGCG CCTGTGGGCC GCTGGCCTGG CGCTTGGGTC TTCGCTTGAA
AATTCCGTGG TGATTTCCGA TGACGACAAG GTCGTCAATA TCGAAGGTCT TCGCTATCCC
GACGAATTCG CCCGTCACAA GACGCTGGAT GCCGTTGGCG ATCTGGCTCT GGCCGGTGCG
CAGTTCATCG GCTGCTACCG CTCCTATCGC GGCGGTCACA AGATGAATTC GCTGGCGTTG
AAAGCGCTGC TGTCGGATGC TTCGGCCTAT GAAGTGGTGG AAGCGCCCGG CGCACGCAGC
GGCAAGGCAA GGGTCCGGGA ATTCGTGGCA GTCAATGCAC CGGGTTTCGC GCCCTGGACG
GCTTGA
|
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| Protein sequence | MKGIGVHSGQ PVTMSFLPAE AGTGIVFHRQ HANGSVTELK AVASQVGNTD LSTVLGSSPT
HWVATVEHVM AAIYSLGLDN LVVEVDGPET PVMDGSSAVY IDAIEQAGIV SLGVKRRYIR
VMKPVRVDNG ASWAEFRPYE GTRFEVEIDF DCPLIGRQSW QGDLTPQSFK QELSRARTFG
FMRDVERLWA AGLALGSSLE NSVVISDDDK VVNIEGLRYP DEFARHKTLD AVGDLALAGA
QFIGCYRSYR GGHKMNSLAL KALLSDASAY EVVEAPGARS GKARVREFVA VNAPGFAPWT
A
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